Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f16r
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.0  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 694 NHVSNLFGIVTSHLQHVTETI 756
           NH+ N+F I+ S  + +T  I
Sbjct: 57  NHIQNIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 694 NHVSNLFGIVTSHLQHVTETI 756
           NH+ N+F I+ S  + +T  I
Sbjct: 40  NHIQNIFKIIKSTNEKITRYI 60


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 521 SAAPPSNWKAASPAAGTSDASSSSPAKY 604
           SAA  ++   + P  G+S  S SSP+ +
Sbjct: 72  SAAAITSTSPSYPGGGSSSPSPSSPSSF 99


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 669 IEDLQTHEKMEIYKMAYDIIEQYFA 595
           I   +   K EI   A D +EQYF+
Sbjct: 54  IHGTEPRSKEEILLHAKDFLEQYFS 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,656
Number of Sequences: 438
Number of extensions: 4405
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)