Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f13r
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 115 FNNNDRFGSDNGLFNNNDWFGLD 183
           FNN ++ G DN  + +ND+   D
Sbjct: 103 FNNKNKDGDDNNDYEDNDYGNQD 125


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 524 IITGVATWLCPVRTAVTTSLSAWPR 598
           I+ G+ +  C V   +T ++  WPR
Sbjct: 385 ILIGLDSQFCTVEGFITAAVDEWPR 409


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 524 IITGVATWLCPVRTAVTTSLSAWPR 598
           I+ G+ +  C V   +T ++  WPR
Sbjct: 438 ILIGLDSQFCTVEGFITAAVDEWPR 462


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 NNNDRFGSDNGLFNNNDW 171
           NNN ++  +N  +NNN++
Sbjct: 91  NNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 NNNDRFGSDNGLFNNNDW 171
           NNN ++  +N  +NNN++
Sbjct: 91  NNNYKYNYNNNNYNNNNY 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 118 NNNDRFGSDNGLFNNNDW 171
           NNN ++  +N  +NNN++
Sbjct: 326 NNNYKYNYNNNNYNNNNY 343


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 547 PGCHSSDYPCYGSLPLDPD 491
           P  H +   C  S+PL+PD
Sbjct: 104 PEVHQAINTCQPSIPLEPD 122


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 99  TPVIVANPEIEVNPIDI 49
           T  +V NPEIE+  +DI
Sbjct: 167 TDPLVVNPEIELPQLDI 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,256
Number of Sequences: 438
Number of extensions: 4275
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)