Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f08r
         (946 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    26   0.57 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.57 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   2.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   9.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   9.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +3

Query: 204 YSACLSYYLHTETNYVLYN-----YSELLNRILNNPCK*QYPNVSRPNLSYHSS 350
           Y + + YYL T  N +LYN     + E    +L N C       S P  S +SS
Sbjct: 331 YMSGVFYYLSTTVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSS 384


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.57
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 809 VSGNVELKNSVDEDGYSADYAAIFNIILWFGVVFTFTLIAI 687
           V  N E+  S  ++     +AAI   + +F V+FT+ +I I
Sbjct: 385 VENNSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILI 425


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 832 WTMSVVTAVTKTEPSYAFTNAFVNSSSASPSNFLA 936
           W      A+T T PSY       + S +SPS+F +
Sbjct: 68  WFNDSAAAITSTSPSYP-GGGSSSPSPSSPSSFFS 101


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 196 WGVIVILWSRLLVINPERSNMATPLLSYSFSHRYK 92
           WG +    S + V N +       +L+Y +S RYK
Sbjct: 293 WGFLPSKDSLVFVDNHDTQRDNPQILTYKYSKRYK 327


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 141 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNN 293
           ERS   + +R +R         S+  +  +H   NY   NY+   N   NN
Sbjct: 294 ERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNN 344


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 141 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPN 317
           E S   + +R +R T       S+  + Y ++  N    NY+   N   NN  K  Y N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 141 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPN 317
           E S   + +R +R T       S+  + Y ++  N    NY+   N   NN  K  Y N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,143
Number of Sequences: 438
Number of extensions: 5865
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30960384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)