Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f06f
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 32 0.41
11_01_0066 - 536281-537196,537397-537452 31 1.3
09_02_0082 - 4060018-4061604 30 2.2
12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916 29 3.9
04_03_0150 + 11877714-11878487,11880928-11881245 29 3.9
11_06_0156 + 20748472-20748951 29 5.1
08_02_0590 + 19044193-19044364,19044464-19045047,19045085-190460... 29 5.1
06_03_1301 - 29159262-29159810,29160360-29160493,29160615-291607... 29 5.1
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 28 6.7
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.7
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 8.9
10_02_0061 - 4812903-4812940,4813140-4813536 28 8.9
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 28 8.9
08_02_0588 + 19036509-19039235 28 8.9
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 32.3 bits (70), Expect = 0.41
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = -1
Query: 308 ERVLVSKEAPQMEVLPFVSAITSPARWG*APALAAEPPTILV 183
E + AP LPF S + + AR G APAL+A P LV
Sbjct: 2 EATAAAAAAPARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 569 PASEGPPMLLREPTTNKNAK*ASRSLPTPSAPARLETM*SLPPPSVLTALTVAAP 733
PAS PP + P + + S + P P +P T S PP + TA TV P
Sbjct: 212 PASPPPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPPPIPTA-TVRPP 265
>09_02_0082 - 4060018-4061604
Length = 528
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 554 LGPGLPASEGPPMLLREPTTNKNA-K*ASRSLPTPSAPARLETM*SLPPPSVLTALTVAA 730
L +P + P+ LR P + + + +P P APA S+P P+V AA
Sbjct: 388 LSSAMPRATTAPLALRGPAPHLRVPRMLAPPIPMPPAPAPPVPTPSMPSPTVPAPPVTAA 447
Query: 731 PA 736
PA
Sbjct: 448 PA 449
>12_01_0372 + 2867471-2867775,2867805-2867901,2868539-2868916
Length = 259
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 426 LDIGGGDPGASGEDVSCAKSEGELTSLGSPG 334
+++ G D S SC S+G ++ GSPG
Sbjct: 169 MEVDGNDDSDSSSPTSCVSSDGRSSAGGSPG 199
>04_03_0150 + 11877714-11878487,11880928-11881245
Length = 363
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -3
Query: 732 GAATVRAVNTEGGGNDHIVSKRA----GADGVGNDLE 634
G T+ V ++GGG +V R GADG+G+D +
Sbjct: 289 GRGTIGGVASDGGGQGVVVLTRGSLEGGADGIGDDFD 325
>11_06_0156 + 20748472-20748951
Length = 159
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 610 CWLPKQHRRSFRSRQPRPKY 551
CWLP+ RRS R R R K+
Sbjct: 6 CWLPRACRRSMRHRSCRTKF 25
>08_02_0590 +
19044193-19044364,19044464-19045047,19045085-19046059,
19046219-19046605
Length = 705
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +1
Query: 205 AANAGAHPHLAGLVIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTAN 384
A N GA A V+ + +GR S+ +L + + AA WR+RR Q AL
Sbjct: 49 AVNGGA----AEDVVVIASGRRSVGEPTLDVSEMLLQAAETWRSRRTQREARPDALPPRP 104
Query: 385 IFS---GGTRVTTSNVQMHGSYNM 447
+ + GG+ TS + G M
Sbjct: 105 VAADGRGGSGEGTSRARGRGEEGM 128
>06_03_1301 -
29159262-29159810,29160360-29160493,29160615-29160750,
29161031-29161347,29161872-29161944
Length = 402
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -3
Query: 174 VSGFLGASKTLGP----GDTDLVVVVKFDGLFCHDHGRQRHQYCCEDLHGY----YQFTG 19
+ G + A K L P GD + + V + G + H + + YCCED H Y G
Sbjct: 108 IHGAVVAVKQLNPLGHQGDREWLTEVSYLGQYNHPNLVELIGYCCEDDHRLLVYEYMANG 167
Query: 18 SLE 10
SLE
Sbjct: 168 SLE 170
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +1
Query: 244 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQARQFTLALGTANIFSGGTRVTTSNV 423
VIA T + + S +NT S A C RR+ +A G A I G+ + S+
Sbjct: 160 VIAATYVDSMLGARSSTSNTESTAAVSCVPARRSMIE--IMAFGVAKILVRGSNMMKSDG 217
Query: 424 QMHGSYNMDTLHNDVA 471
G + L +VA
Sbjct: 218 AASGERKIGILAFEVA 233
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 277 RWKFCHSSVRSQVQQDGGEHQRWRQNHPQSW 185
R + HS GG HQR R +HP +W
Sbjct: 543 RHRHGHSHGDHHHHYHGGHHQRRRHHHPPAW 573
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 277 CGASLLTNTRSVTAAHC 327
CG+ ++T TRSVT A C
Sbjct: 275 CGSRIITTTRSVTVASC 291
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 65 WRWRPWSW---QKRPSNLTTTTRSVSPGPRVLDAPRKP 169
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 356 SSPSLLAQLTSSPEAPGSPPP 418
SS S + +SSP AP SPPP
Sbjct: 7 SSTSSSSSASSSPRAPSSPPP 27
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 244 VIALTNGRTSICGASLLTNTRSVTAAHCWRTRRAQ 348
V+ + +GR S+ +L + + AA WR+RR Q
Sbjct: 185 VVVIVSGRRSVGEPTLDVSEMLLQAAQAWRSRRTQ 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,303,990
Number of Sequences: 37544
Number of extensions: 412408
Number of successful extensions: 1978
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -