Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f04r
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    28   1.6  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.7  
SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    27   4.8  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    26   8.4  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 486 AAIQCAGPTKSAPLWIPQSTMPYTPPRTEDGETSSR 593
           AA+Q  GP K A      S  P TPP    GE+ SR
Sbjct: 536 AALQSDGPLKKAKEPEESSITPTTPPSFNVGESLSR 571


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 70  IFLFANSQDFYLHNLSHAFYNSNNIDK*D 156
           + L   S DF  H+L+HAF +  + D  D
Sbjct: 122 VLLLLKSSDFVAHDLNHAFDDCKDFDNAD 150


>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 24  YRSSXSTIKQFKQITYFSIRKF 89
           Y  S  T+KQ K+  YF +RK+
Sbjct: 97  YEQSRKTLKQIKKERYFPLRKY 118


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 501 AGPTKSAPLWIPQSTMPYTPPRTEDGETSSREG*WEK 611
           AG       W    ++P+   R +DG+   R+G W K
Sbjct: 364 AGDDYVLRFWKTDCSLPFKEMRVDDGKYLCRDGSWVK 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,278
Number of Sequences: 5004
Number of extensions: 74132
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)