Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f04r
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical p...    31   1.1  
AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z92822-7|CAH10786.1|  601|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z83244-9|CAH10804.1|  601|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z83244-1|CAB05827.2|  634|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF145376-1|AAD39815.1|  634|Caenorhabditis elegans LIT-1 protein.      29   6.0  
AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical ...    29   6.0  

>Z81062-14|CAB02947.2|  362|Caenorhabditis elegans Hypothetical
           protein F15A4.3 protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 14  TWWLQIFXFNN*TIQTDYIFFYSQIHKTSIYI 109
           T+W+ I+  N+  I+  YIF+   I +TSIYI
Sbjct: 12  TYWIPIYSLND-KIREPYIFYVFAIFQTSIYI 42


>AF000196-8|AAL11096.1|  624|Caenorhabditis elegans Hypothetical
           protein B0041.2b protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 496 NALVRPNPHHSGYHNLRCHTHRREQKMAKHH--PEKDNGRKWSQPSHRKVTQGGGH 657
           N  ++ NPHH G + +  H  R +Q     H  P    G   +Q  +R     GG+
Sbjct: 33  NQRIQQNPHHGGMNRMMPHGFRPQQGHHPSHMPPYGQRGNNQNQYGNRMQGGQGGY 88


>Z92822-7|CAH10786.1|  601|Caenorhabditis elegans Hypothetical
           protein W06F12.1d protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 487 PQSNALVRPNPHHSGYHNLRCHTHRREQKMAKHHPEK 597
           P+S+ + +P PH + +H+L+    +++Q+ A HH ++
Sbjct: 108 PRSDVIQQP-PHFALHHHLQNLVQQQQQQQAHHHHQQ 143


>Z83244-9|CAH10804.1|  601|Caenorhabditis elegans Hypothetical
           protein W06F12.1d protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 487 PQSNALVRPNPHHSGYHNLRCHTHRREQKMAKHHPEK 597
           P+S+ + +P PH + +H+L+    +++Q+ A HH ++
Sbjct: 108 PRSDVIQQP-PHFALHHHLQNLVQQQQQQQAHHHHQQ 143


>Z83244-1|CAB05827.2|  634|Caenorhabditis elegans Hypothetical
           protein W06F12.1a protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 487 PQSNALVRPNPHHSGYHNLRCHTHRREQKMAKHHPEK 597
           P+S+ + +P PH + +H+L+    +++Q+ A HH ++
Sbjct: 141 PRSDVIQQP-PHFALHHHLQNLVQQQQQQQAHHHHQQ 176


>AF145376-1|AAD39815.1|  634|Caenorhabditis elegans LIT-1 protein.
          Length = 634

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 487 PQSNALVRPNPHHSGYHNLRCHTHRREQKMAKHHPEK 597
           P+S+ + +P PH + +H+L+    +++Q+ A HH ++
Sbjct: 141 PRSDVIQQP-PHFALHHHLQNLVQQQQQQQAHHHHQQ 176


>AF016677-4|AAL11109.2|  304|Caenorhabditis elegans Hypothetical
           protein ZK1240.3 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 480 FMAAIQCAGPTKSAPLWIPQSTMPYTPPRTEDGETSSREG*WEKMVTTLTQESNSG 647
           F+A ++  GPT     W  ++ +P  PP T+D E        +  +  LT E +SG
Sbjct: 252 FIAGVEMRGPT-----WYYENELPDCPPATDDVEVRLPTIKIKDCLLELTNEDSSG 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,386,738
Number of Sequences: 27780
Number of extensions: 419029
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)