Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f04f
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical ...   190   1e-48
AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical ...    77   2e-14
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    31   0.88 
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3a protein.
          Length = 236

 Score =  190 bits (462), Expect = 1e-48
 Identities = 90/166 (54%), Positives = 122/166 (73%), Gaps = 3/166 (1%)
 Frame = +2

Query: 86  MDTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDK 265
           M  YE+V++VK +VFV++IPP     G++AADWNL  P WTGRMRLV+ G  L M+LED 
Sbjct: 1   MGDYENVLMVKPKVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLEDG 59

Query: 266 TSGELFAKCPIDKYPGVALEAVTDSSRYFVVKIQDDNGCAAYIGLGFGDRSDSFDLNVAL 445
            + +L+AKCPID +PG A+EAV+DSSRYFV+++Q+DNG  A++G GF +R D+FD NV L
Sbjct: 60  ETCDLYAKCPIDAHPGNAIEAVSDSSRYFVIRLQNDNGQQAFVGCGFQERGDAFDFNVTL 119

Query: 446 QDHFKWLKKEQE---SDQTPQGQLDLGFKDGETIKINMKITKKDGS 574
           QDHF+++++  E    D +    LDL FK+G+TI IN  I KKD S
Sbjct: 120 QDHFRYIERSAELEKQDLSAGPSLDLAFKEGQTISIN--IGKKDKS 163


>AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3b protein.
          Length = 69

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 34/59 (57%), Positives = 44/59 (74%)
 Frame = +2

Query: 86  MDTYESVILVKNEVFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLED 262
           M  YE+V++VK +VFV++IPP     G++AADWNL  P WTGRMRLV+ G  L M+LED
Sbjct: 1   MGDYENVLMVKPKVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLED 58


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 181 ICCPVSSVRCSGWYFK-----NEYFVLH*NNTFISIHCL*KIML 65
           +C P+S       YF      N   VL  NNTF+ IHCL +I+L
Sbjct: 32  MCIPISIYSLWRIYFSVKLHFNSKIVLFTNNTFVLIHCLARIVL 75


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 356 VKIQDDNGCAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGET 535
           +K   D G A         +  S   N+ALQ   K  K EQ   +  +  +    ++GE 
Sbjct: 110 LKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATK--KAEQCDKEKNEAVVKYAMREGEM 167

Query: 536 IKINMKITKKDGS 574
           +K+  +I+KKD +
Sbjct: 168 MKLRDEISKKDSN 180


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 356 VKIQDDNGCAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGET 535
           +K   D G A         +  S   N+ALQ   K  K EQ   +  +  +    ++GE 
Sbjct: 110 LKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATK--KAEQCDKEKNEAVVKYAMREGEM 167

Query: 536 IKINMKITKKDGS 574
           +K+  +I+KKD +
Sbjct: 168 MKLRDEISKKDSN 180


>Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical
           protein D2089.5 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 341 SRYFVVKIQDDNGCAAYIGLGFGDRSDSFDLNVA-LQDHFKWLKKEQESDQTPQGQLDLG 517
           +R+ V+++ DD G    I  G   RS  +D   + +QD ++ +K   E    P+  L   
Sbjct: 302 ARHKVIRLNDD-GKVNKIQFGNAMRSWFYDCEPSKVQDVYRAMKTFTEYCYQPRNMLKFR 360

Query: 518 FKDGETI 538
            +DG+T+
Sbjct: 361 LEDGDTV 367


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 300 SIGHFAN-NSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKFQSA 175
           ++  FAN  S  + S N      P+ TNL + ++CG+ K+  A
Sbjct: 787 TLNMFANVKSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPA 829


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,076
Number of Sequences: 27780
Number of extensions: 333852
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)