Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f02f
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7NSX5 Cluster: Chromosome chr18 scaffold_1, whole geno...    37   0.55 
UniRef50_A1YKE3 Cluster: CCR4 associated factor-like protein; n=...    35   2.2  
UniRef50_Q8A1Z2 Cluster: Arabinan endo-1,5-alpha-L-arabinosidase...    34   3.9  
UniRef50_A4V7B4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_A1TXN2 Cluster: Plasmid recombination enzyme; n=1; Mari...    33   9.0  
UniRef50_O01717 Cluster: Alpha-2-macroglobulin; n=1; Limulus sp....    33   9.0  

>UniRef50_A7NSX5 Cluster: Chromosome chr18 scaffold_1, whole genome
            shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
            chr18 scaffold_1, whole genome shotgun sequence - Vitis
            vinifera (Grape)
          Length = 1193

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
 Frame = +1

Query: 319  YPRRLVGLRCCPPSLVTQHAERGW*AWQHRR---PGXXXXXXXEVHAHREVMCTQALVCR 489
            +P+++V +    P  V  H + G   W++ R   PG          AHR V+ +  +   
Sbjct: 937  FPKKIVSVGDLKPEPVLWHEDNGRRPWENGRQNLPGTISGRQLGEAAHRLVVNSLQVKAE 996

Query: 490  RGGLGASLLVEPALPLHSYRGPPV 561
            R G G  +   P  P   Y GPP+
Sbjct: 997  RNGFGDQMHAPPPYPAAPY-GPPL 1019


>UniRef50_A1YKE3 Cluster: CCR4 associated factor-like protein; n=1;
           Brachypodium sylvaticum|Rep: CCR4 associated factor-like
           protein - Brachypodium sylvaticum (False brome)
          Length = 291

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 363 GDPTR*TRLVSVAAPTSG--CCSITRSRGPRSQGGNVHSGTSVSEGWTRRVSPGRARPPT 536
           G PTR TR  S A PTS   CCS          G    SG+S S   TR  +    RPP+
Sbjct: 141 GPPTRATRS-SAATPTSSATCCSWAWHSWAPGAGPTPSSGSSTSAASTRPAATRTRRPPS 199

Query: 537 ALIQGPSCW 563
              + P+ W
Sbjct: 200 PCSR-PTGW 207


>UniRef50_Q8A1Z2 Cluster: Arabinan endo-1,5-alpha-L-arabinosidase A;
           n=10; Bacteroidetes|Rep: Arabinan
           endo-1,5-alpha-L-arabinosidase A - Bacteroides
           thetaiotaomicron
          Length = 637

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -2

Query: 465 HYLPVSVDLCCE*CCSTRTSVLPRSPAAFSVLGHQTGRATSESH 334
           +YL  S+  CCE   ST T+V+ RS   F     + GR+ S++H
Sbjct: 520 YYLFASIGRCCEGLKSTYTTVVGRSKNLFGPYVDKKGRSMSDNH 563


>UniRef50_A4V7B4 Cluster: Putative uncharacterized protein; n=1;
           Pseudomonas fluorescens SBW25|Rep: Putative
           uncharacterized protein - Pseudomonas fluorescens SBW25
          Length = 686

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 397 TLTSRVQRVGSPDWEGNI*VPPVVLDTELTVAPASSSKSLAGVLPNDAEVLSLDLC*AEV 218
           +++  VQ   +PD++G    P  V+D +L  AP  + K   G   N  +V  + +C  ++
Sbjct: 365 SVSKSVQSGTNPDYKGQSLAPDCVIDGKLDQAPGKAGKGFGGGAGNKEKVDGMTVCPEDI 424

Query: 217 CLRED 203
               D
Sbjct: 425 SEARD 429


>UniRef50_A1TXN2 Cluster: Plasmid recombination enzyme; n=1;
           Marinobacter aquaeolei VT8|Rep: Plasmid recombination
           enzyme - Marinobacter aquaeolei (strain ATCC 700491 /
           DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
           (strain DSM 11845))
          Length = 384

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 226 LSRGPATRPPRHSEVRLQDS-LMTTLARQSAPYPRRLVGLRCCPPSLVTQHAERGW 390
           L RG      RHSE+R   S L T + R+    P   V    CPP  +TQ A R W
Sbjct: 181 LQRGLKKSRARHSELRTWYSRLPTEIKREEIRLPSFRVR---CPPPAITQTARRAW 233


>UniRef50_O01717 Cluster: Alpha-2-macroglobulin; n=1; Limulus
           sp.|Rep: Alpha-2-macroglobulin - Limulus sp
          Length = 1507

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 364 PDWEGNI*VPPVVLDTELTVAPASSSKSLAGVL 266
           P+WE N+ VPP + +T LT+ P+      A +L
Sbjct: 551 PEWENNVIVPPHIGETSLTLIPSFEMNPSAKIL 583


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,389,593
Number of Sequences: 1657284
Number of extensions: 15160074
Number of successful extensions: 42466
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42446
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)