Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f02f
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.5  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    27   2.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    26   6.0  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    25   8.0  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 580 ICVMTTQQEGPCMSAVGGRARPGETRRVHPSDTLVP 473
           +C  + +   PC   VG   RP E  + +PS   VP
Sbjct: 52  LCNDSHEALSPCTQPVGNSGRPVEAFKTYPSTPAVP 87


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 208 REDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLVGLRC 348
           R DR Q   G  T+P  H + ++   ++  L   S  Y  +LV  RC
Sbjct: 42  RYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECVSCKYKNQLVLKRC 88


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 163 GLEQMIRSTCSTFGLREDRLQLSRGPATRPPRHSEVRLQDSLMTTLARQSAPYPRRLV 336
           G  + +R  CST+ LR+D   LS     R   +      +    T+ R+  P  RRLV
Sbjct: 736 GDHKQLRPGCSTYALRQDPFNLSISMFERLVEND----MEYTRLTMQRRMHPQIRRLV 789


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 485 VGGVDSARLSWSSPPSHCTH 544
           +GG+D A   W    +HC+H
Sbjct: 194 IGGIDGAIKIWDLRNNHCSH 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,728
Number of Sequences: 5004
Number of extensions: 55845
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)