Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f02f
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1715 - 39380739-39381764,39382428-39382504,39382605-393829... 31 0.67
06_03_0375 + 20052687-20053214,20053943-20054110,20054272-200543... 31 1.2
03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594 30 2.1
01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901 29 2.7
09_06_0287 + 22047404-22048409,22048754-22049967 29 3.6
02_05_0681 + 30842038-30842301,30843067-30843300,30843409-308435... 29 3.6
02_02_0248 - 8267332-8268276,8268338-8269288 29 3.6
02_02_0399 - 9825365-9825912,9826019-9826190,9826325-9826442,982... 28 6.3
09_04_0256 + 16148820-16148998,16149547-16150241,16150317-161505... 28 8.3
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 8.3
>01_06_1715 -
39380739-39381764,39382428-39382504,39382605-39382991,
39383045-39383251,39384168-39384273
Length = 600
Score = 31.5 bits (68), Expect = 0.67
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 382 VQRVGSPDWEGNI*VPPVVLDTELTV-APASSSKSLAGVLPNDAEVLSLDLC*AEVCLRE 206
+ V PD +G + + L+ +L V +P SSSKS + +P + V+S+D + V
Sbjct: 60 ISDVNMPDMDGFKLLEHIGLEMDLPVISPYSSSKSFSLHVPTNKFVMSIDGETSRVMKGV 119
Query: 205 DRMCCRYSVSSV-LTLLKNVSQ*SFNRSSH 119
C Y + V + L+N+ Q + + H
Sbjct: 120 QHGACDYLLKPVRMKELRNIWQHVYRKKMH 149
>06_03_0375 +
20052687-20053214,20053943-20054110,20054272-20054354,
20054541-20054610,20054973-20055077
Length = 317
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 518 SSPPSHCTHTGALLLGSHYANFIAI 592
+S P H TH LLL HY NF A+
Sbjct: 2 ASSPRHSTHHPTLLLRRHYPNFCAL 26
>03_05_0702 - 26934736-26935551,26937494-26937538,26938484-26938594
Length = 323
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -3
Query: 575 RNDYPTGGPLYECSGRAGSTRRDAPSP 495
R D P G +EC GRAG RD P+P
Sbjct: 122 RGDGPPPGNCFEC-GRAGHWARDCPNP 147
>01_01_0849 - 6623963-6624519,6627371-6628173,6628390-6628901
Length = 623
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 351 PSQSGDPTR*TRLVSVAAPTSGCCSITRSRGPRSQGGNVHSGTSVSEGWTR 503
P + P L SV+ P + CCS+T GG+ + + S G T+
Sbjct: 92 PVLTAKPATSISLRSVSPPAAACCSLTSIENVADHGGDHLTAGACSSGTTQ 142
>09_06_0287 + 22047404-22048409,22048754-22049967
Length = 739
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 416 PGRRCCHAHQPRSACWVTRLGGQHLSPTSRLGYGADCRA 300
P C A RSAC + +++S ++R GY DC A
Sbjct: 284 PVNSTCPADAARSACKSSHSSCRNVSSSARAGYVCDCDA 322
>02_05_0681 +
30842038-30842301,30843067-30843300,30843409-30843578,
30844130-30844474,30844475-30844661,30844747-30844798,
30844843-30845108,30845302-30845400,30845577-30846292,
30846616-30847098,30847288-30847546
Length = 1024
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 380 SACWVTRLGGQHLSPTSRLGYGADCRASVVIKESCRRTS 264
S C +GGQ +S TSR G+ S V+K SC+ TS
Sbjct: 674 SKCLAELMGGQ-ISFTSRPFVGSTFTFSAVLKRSCKDTS 711
>02_02_0248 - 8267332-8268276,8268338-8269288
Length = 631
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 265 EVRLQDSLMTTLARQSAPYPRRLVGLR 345
E LQD LM APYPRRL LR
Sbjct: 229 EPELQDVLMELFVDFPAPYPRRLAYLR 255
>02_02_0399 -
9825365-9825912,9826019-9826190,9826325-9826442,
9826612-9826878,9826992-9827062,9827163-9827791,
9827898-9828053,9828150-9828210
Length = 673
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 359 LGGQHLSPTSRLGYGADCRASVVIKESCRRTSE*RGGLVAG 237
L G++LSP G+G AS ++ S RGGL AG
Sbjct: 127 LKGEYLSPRDANGHGTH-TASTIVGGQVWNASHKRGGLAAG 166
>09_04_0256 +
16148820-16148998,16149547-16150241,16150317-16150573,
16150668-16151349,16151423-16151626,16151715-16152449,
16152533-16152698,16153253-16153400
Length = 1021
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = -3
Query: 512 RDAPSPPLRHTSA*VHITXXXXXXXXXXXXXAPGRRCCHAHQPRSACWVTRLGGQHLS 339
R A S P R A V ++ PG RC + H R TRL QHL+
Sbjct: 47 RSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRL-KQHLA 103
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = -3
Query: 512 RDAPSPPLRHTSA*VHITXXXXXXXXXXXXXAPGRRCCHAHQPRSACWVTRLGGQHLS 339
R A S P R A V ++ PG RC + H R TRL QHL+
Sbjct: 191 RSAASAPARPVPARVEMSDSRDPVWEHGENIPPGWRCKYCHTKRGGGGATRL-KQHLA 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,568,953
Number of Sequences: 37544
Number of extensions: 460553
Number of successful extensions: 1409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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