Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f01r
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...   125   7e-30
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    30   0.49 
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    28   1.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.5  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    27   3.4  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   6.0  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   7.9  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   7.9  

>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score =  125 bits (302), Expect = 7e-30
 Identities = 72/264 (27%), Positives = 136/264 (51%), Gaps = 7/264 (2%)
 Frame = -2

Query: 860 TARSAAEGIADKGQRIGQTSAFRTISQATEVVKNEMSPRGL----EGRVYIAPVALRKRI 693
           TA + A G+    + + +T+ ++TI Q T    +  S  G     E R  +     R+  
Sbjct: 128 TANTVATGVDTATKPVRETAFYKTIKQ-TMSDGSTSSRYGFYADKEQRKKLREEFERRNR 186

Query: 692 EVAEDERTFSPDTETTGVELHKDSKFYQQWENFKNNNQYVNKVLDWKIKYEESDNPVVRA 513
             A   R   P+ +   V +H +  +  + E  KN ++ V K+ + K  Y+ES++P+V +
Sbjct: 187 MFASSAR-IQPNEDVQSVVVHSNPSWKNKVEQIKNESRLVRKIQELKKSYQESEHPIVSS 245

Query: 512 SRLLTEKMGSLFGNMFEKTELSKTLTEICKIDPNFTAQKFLEDCANDIIPNILEAMVRGD 333
            R + + +  ++  MF +TE S+ +    +IDP+F  + FL+     I+P + EA V+GD
Sbjct: 246 IRDMADSISGVWSRMFSETEASQVMRRFKEIDPSFNTEHFLQYLREYIVPEVTEAYVKGD 305

Query: 332 LEILKDWCYEGVFNILATPIKQCKQLGYRLDSKILDIEQIELVMGKMMDQG--PVLVITF 159
            E+LK W  E  F++  T  K+  + G     KILDI  ++++  +++     PV ++TF
Sbjct: 306 KEVLKTWLSEAPFSVYETTTKEYAKHGVVSVGKILDIRGVDIMSQRLLQPNDIPVFIVTF 365

Query: 158 QSQQIMCVRD-GKGNVIEGSPDKV 90
           ++Q++   +D   G ++ G  D++
Sbjct: 366 RTQEVHMFKDASSGELVAGKDDRI 389


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 217 CSMSRILESSRYPSCLHCLIGVARMLNTPS*HQSFSISKSPLTIASRMFGMISLAQSSRN 396
           C++S  L+  R P+C + L+G     N    H  +S   +P+      +G   L  S +N
Sbjct: 250 CNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYS-ENAPICFEFAKYGFCELGTSCKN 308


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 590 NNNQYVNKVLDWKIKYEESDNPVVRAS-RLLTEKMGSLFGNMFEKTELSKTLTE 432
           NN Q V KVL   ++     NP++  S R+L  K  S     +E T+   ++TE
Sbjct: 34  NNAQRVEKVLGKSLRVTALINPLINESERVLKSKCASDVAFAYENTKTYVSVTE 87


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 416  PNFTAQKFLEDCANDIIPNILEAMVRGDLEILKDWCYEGVFNI 288
            PNF+   FLE   N  +P+ + +M + + +    + YE +++I
Sbjct: 1114 PNFSTMSFLEILFNSQLPSFIFSMTQREADNFGRFLYEVLYDI 1156


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 245 LDSKILDIEQIELVMGKMMDQGPVLVITFQSQQIMCVRDGKGNVIEGSPD 96
           LD    D++ +EL+  ++     + +  F++ Q +C+R  +   IE  P+
Sbjct: 33  LDDVPDDVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVPE 82


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 7/25 (28%), Positives = 19/25 (76%)
 Frame = +3

Query: 201 HHQLDLFDVEDLGVQPIPQLLALLD 275
           H + ++FD +D  ++P+P+L++ ++
Sbjct: 543 HKKTEVFDQDDTDLEPVPRLMSKVE 567


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 639 HSSRLGVRRKRSFVFCDLNTFP*GDRSDVDTPLEPSG*HFVFHN 770
           + S+    R+ +    D +  P  DR  + TPL PS  H+V HN
Sbjct: 238 YRSKCSFERRFARTVPDASRHPYPDR--LPTPLTPSNAHWVVHN 279


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 57  GTPRSSTPSRRGGCSSC 7
           GTPR +T    GGC  C
Sbjct: 239 GTPRGATNCNEGGCPRC 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,483,881
Number of Sequences: 5004
Number of extensions: 73423
Number of successful extensions: 269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)