Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f01r
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322... 52 8e-07
07_01_0561 + 4171812-4172144,4173468-4174253 29 3.6
01_01_0647 - 4909311-4909412,4909538-4909610,4909930-4910047,491... 29 3.6
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 29 4.8
10_06_0142 - 11175732-11176545,11176924-11177450,11177544-111777... 29 4.8
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 29 4.8
04_01_0382 - 5076673-5077774,5078122-5078186 29 6.3
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 29 6.3
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 29 6.3
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 28 8.4
06_01_1097 + 8996985-8997635 28 8.4
>07_03_0042 -
12731228-12731362,12731984-12732046,12732136-12732207,
12732783-12732855,12732937-12733005,12733375-12733439,
12733677-12734087,12734186-12734230,12734338-12734413,
12734555-12734629,12735101-12735207,12736573-12736635
Length = 417
Score = 51.6 bits (118), Expect = 8e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = -2
Query: 239 SKILDIEQIELVMGKMMDQGPVLVITFQSQQIMCVRDGKGNVIEGSPDKV 90
SKIL I ++ KMM P++++ FQ+QQI CVRD +G V EG D +
Sbjct: 327 SKILHISDADVRETKMMGSTPIIIVGFQTQQIYCVRDREGQVTEGGQDTI 376
Score = 38.7 bits (86), Expect = 0.006
Identities = 29/89 (32%), Positives = 44/89 (49%)
Frame = -2
Query: 629 KDSKFYQQWENFKNNNQYVNKVLDWKIKYEESDNPVVRASRLLTEKMGSLFGNMFEKTEL 450
K S ++WE FKN D + ++E SDNPVV +K+ L ++FE+T
Sbjct: 245 KKSVLGEKWEAFKNK-----VAEDVRERWETSDNPVV-------QKIQDLNESIFEETAT 292
Query: 449 SKTLTEICKIDPNFTAQKFLEDCANDIIP 363
+ + EI + DP+F+ F D I P
Sbjct: 293 AVSFREIRQRDPSFSLPDFAGDVQEMIKP 321
>07_01_0561 + 4171812-4172144,4173468-4174253
Length = 372
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -2
Query: 587 NNQYVNKVLDWKIKYEESDNPVVRAS-RLLTEKMGSLFGN 471
N+ + ++L+ + EE+DNPVV +L+EKMG L N
Sbjct: 327 NDNFWEELLNEGLVGEENDNPVVEDDMNVLSEKMGYLNSN 366
>01_01_0647 -
4909311-4909412,4909538-4909610,4909930-4910047,
4910133-4910229,4910350-4910445,4910536-4910631,
4910725-4910871,4911877-4911987,4912582-4912620
Length = 292
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 467 FEKTELSKTLTEICKIDPNFTAQKFLEDCANDIIPNIL 354
FE E S+T I K+D F + F+ A D+I +L
Sbjct: 224 FEAKEHSETYRRIVKVDLKFPLKPFVSPAAKDLISQML 261
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 154 DWNVMTRTGPWSIILPITSSICSMSRILESSRYPSCLHCL 273
D N TG WS + P C + R + S P+C HC+
Sbjct: 360 DLNSSAWTGNWSQLCPT----CKIIRPMRSKHCPTCKHCV 395
>10_06_0142 -
11175732-11176545,11176924-11177450,11177544-11177761,
11177916-11177961,11178203-11178253
Length = 551
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 156 LERDDEDRPLVHHL 197
+E DEDRPL+HHL
Sbjct: 1 MEASDEDRPLIHHL 14
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 29.1 bits (62), Expect = 4.8
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = -2
Query: 644 GVELHKDSKFYQQWENFKNNNQYVNKVLDW------KIKYEESDNPVVRASRLLTEKMGS 483
G++L KDSK E+FK + K LD KI SD P V ++T K G
Sbjct: 652 GLKLGKDSKLKDLKESFKELTDWWKKALDTESVDSVKISNRLSDTPCV----VVTSKYG- 706
Query: 482 LFGNMFEKTELSKTLTEICK 423
NM EK S+TL++ K
Sbjct: 707 WSANM-EKIMQSQTLSDASK 725
>04_01_0382 - 5076673-5077774,5078122-5078186
Length = 388
Score = 28.7 bits (61), Expect = 6.3
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 90 NFIRRTFDNIPFAVSDTHYLLRLERDDEDRPLVHHLAHHQLDLFD--VEDLGVQPIPQLL 263
N RRTFD++P D+ +++ D V+ L L LF+ G+ P
Sbjct: 101 NHARRTFDHMPDRNMDSWHIM------IDGYAVNGLGDVALQLFEEMKTKYGIAPTAHTF 154
Query: 264 ALLDRGCENVEHALVTPVLQYFQVSSDHSL 353
L+ C N E A+ L + +S DH +
Sbjct: 155 TLVLNACANSE-AIEEAFLYFDAMSRDHGI 183
>03_03_0105 +
14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -2
Query: 542 EESDNPVVRASRLLTEKMGSLFGNMFEKTELSKTLTEICKIDPN----FTAQKFLEDCAN 375
+ S N + A ++ EK+G+ GN + TE + +I D N T+ C N
Sbjct: 444 QASSNQKLNAGEIVEEKVGADMGNNLQSTESYNSGRDISNTDVNTSFGCTSDVNTSTCCN 503
Query: 374 DIIPNILEAMVRGDLEILK 318
+ + + E R E+L+
Sbjct: 504 EDVKSPKEIRSRRLFELLE 522
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 275 IKQCKQLGYRLDSKILDIEQIELVMGKMMDQGPVLVIT 162
IK CK L YR D + +IEQ + M G V++ T
Sbjct: 68 IKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITT 105
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 165 DDEDRPLVHHLAHHQLDLFDVEDLGVQPIPQLLALLDRGCENVEHALVTPVLQ 323
DD+++ + + +DL +D + + +L LL RG V H+ + P+L+
Sbjct: 339 DDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGI-GVHHSGLLPILK 390
>06_01_1097 + 8996985-8997635
Length = 216
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 732 ACLHRSCRLKETY*GRRRRK-NVFSGHRDDWSGIAQG 625
ACL ++ RL+ T GRRRR+ + G W +++G
Sbjct: 141 ACLLQTGRLRRTAGGRRRRRPRMRRGAAPSWRSVSRG 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,393,431
Number of Sequences: 37544
Number of extensions: 496055
Number of successful extensions: 1570
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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