Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f01f
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     32   0.090
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    29   0.64 
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    29   0.84 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   2.6  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   3.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   5.9  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    26   5.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.8  

>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
 Frame = -1

Query: 626 ILCPLSAIPSAALRAVFEMSSVIF------PAFFGYITFTRLL*HMLHFSFDTLNSFFQD 465
           I+ P+S +   A    F +  + F      P ++GY  F  +   ++H  F      F++
Sbjct: 478 IVKPVSVVKRVAFNIPFLLICIFFYIQSSPPFYYGYALFPTIFLQLIHSIFPNTKLGFKN 537

Query: 464 F*TL--RRF*FNGVKLFPSCLQSFRVLKFLCLLSELLYILFH 345
           F T+  ++  F+ +K+       F  L  LCLL  ++Y  FH
Sbjct: 538 FLTVAKQKHGFSLLKIL------FISLCILCLLQFIVYSYFH 573


>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -1

Query: 440 FNGVKLFPSCLQSFRVLKFLCLLSELLYILF 348
           F+GVK+ P CL++F+ LK   L   L Y++F
Sbjct: 3   FSGVKVSPECLEAFQELK---LGKSLRYVVF 30


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 321 EDIAKNKEMKENIKKFREEAQKLENSEA 404
           ED+ K+K+ KE+++K  +++QK+    A
Sbjct: 64  EDVGKHKKTKESLEKSNDDSQKISKKGA 91


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 594 STASRLRDVLRNFPCFFWLYHF 529
           S +S  R+VLR +  FFWL+ +
Sbjct: 309 SDSSNTREVLRRYSDFFWLHSY 330


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 258 VWCTGLILPRVMLSSNSKVEHISNERDYII 169
           VW  G+IL  ++L +    E ISN  DY++
Sbjct: 196 VWSCGIILFALLLGNTPWDEAISNTGDYLL 225


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 312 NIKEDIAKNKEMKENI-KKFREEAQKLENSEALQAARKKFH 431
           N K  +   KE +E I ++ REE ++L   E+L+   KK H
Sbjct: 633 NQKNVLKAQKEEEERIAQQKREEKRRLAYEESLKRHAKKLH 673


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 264 CRQYSARKGFFSSIIENIKEDIAKNKEMKENIKKFR-EEAQKL 389
           CR     KGFF S I+    +I +N+  K+  ++ + +E Q+L
Sbjct: 128 CRVEENEKGFFISYIDKNPANILRNEANKKRERQEKSDEEQRL 170


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 270 QYSARKGFFSSIIE-NIKEDIAKNKEMKENIKKFREEAQKLENSE-ALQAARKK 425
           Q    K  FS ++   +K+D   N+E+ + ++  R++ Q+ E +E +L++ R++
Sbjct: 544 QLMTLKSSFSEVMSYELKDDDNYNEELDKLVEDVRKKLQEKEEAESSLRSVRER 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,351
Number of Sequences: 5004
Number of extensions: 47824
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)