Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f01f
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091...    29   2.7  
02_01_0526 - 3830705-3830932,3831684-3831748,3831958-3832104,383...    28   8.1  

>04_04_1467 -
           33808507-33808588,33808869-33808942,33809028-33809194,
           33809392-33809461,33809544-33809681
          Length = 176

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 297 SSIIENIKEDIAKNKEMKENIKKFREEAQKL 389
           +++I  ++  I + K+  E+IK+ REEAQKL
Sbjct: 128 ATLIHMLENQIQRRKQAIEDIKQRREEAQKL 158


>02_01_0526 -
           3830705-3830932,3831684-3831748,3831958-3832104,
           3832208-3832256
          Length = 162

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +3

Query: 309 ENIKEDIAKNKEMKENIKKFREEAQKLENSEALQAARKKFHXXXXXXXXXXXXXXXTIEG 488
           E  + +  K ++ KE+ +  R+E  + E  E  +  +KK H               + E 
Sbjct: 18  EEEERERKKRRDKKESRRSSRDEQAEEEEEEERRRRKKKKHGDRGKDKERDSKEKHSKEK 77

Query: 489 IKGKMEHV---LEEASKSDIAKKSRE 557
            K K +H     +E SK D   K+ E
Sbjct: 78  EKSKRKHKDDDFKEISKDDYFAKNNE 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,528,427
Number of Sequences: 37544
Number of extensions: 280852
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)