Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17f01f
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-8|AAB53011.1| 425|Caenorhabditis elegans Hypothetical pr... 61 6e-10
U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helical... 32 0.45
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical... 32 0.45
U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical pr... 29 2.4
U13646-4|AAC24420.1| 211|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z54271-2|CAA91033.1| 309|Caenorhabditis elegans Hypothetical pr... 28 5.5
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 5.5
Z83231-4|CAB05752.1| 356|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 27 9.7
>U97405-8|AAB53011.1| 425|Caenorhabditis elegans Hypothetical
protein T09B4.9 protein.
Length = 425
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/102 (27%), Positives = 57/102 (55%)
Frame = +3
Query: 252 TIQECRQYSARKGFFSSIIENIKEDIAKNKEMKENIKKFREEAQKLENSEALQAARKKFH 431
T ++ + ++GF +++I+N+++++ KNKE++E+ ++ + Q+L S+AL+ ARKKF
Sbjct: 25 TFRDYSNPAPKRGFLNNLIDNVRDEMQKNKELQEHQQQLKARMQELNESDALKDARKKFE 84
Query: 432 XXXXXXXXXXXXXXXTIEGIKGKMEHVLEEASKSDIAKKSRE 557
IE + M+ ++ E K++ KK E
Sbjct: 85 IVEKETLKSSEVVKQKIEELSDHMKKMVHEIQKTEAGKKMTE 126
>U64858-2|AAN84866.1| 1310|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform c
protein.
Length = 1310
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +2
Query: 191 EMCSTFEFEDNITLGKIRPVHHTRMSAVFCKERILLINNREH-----QRGYCKEQGNERE 355
E+ ++E + + + K++P H + +F KE ILL NN +H + G C G E
Sbjct: 816 EVPMSWEKDVRVAIKKLKPNHSFQEKMMFMKEAILL-NNLDHPNIVKELGVCITPGQELI 874
Query: 356 YKEVQRGG 379
E GG
Sbjct: 875 LLEYMEGG 882
>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 3, isoform a
protein.
Length = 2456
Score = 31.9 bits (69), Expect = 0.45
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = +2
Query: 191 EMCSTFEFEDNITLGKIRPVHHTRMSAVFCKERILLINNREH-----QRGYCKEQGNERE 355
E+ ++E + + + K++P H + +F KE ILL NN +H + G C G E
Sbjct: 1962 EVPMSWEKDVRVAIKKLKPNHSFQEKMMFMKEAILL-NNLDHPNIVKELGVCITPGQELI 2020
Query: 356 YKEVQRGG 379
E GG
Sbjct: 2021 LLEYMEGG 2028
>U41011-4|AAA82287.1| 294|Caenorhabditis elegans Hypothetical
protein D2024.4 protein.
Length = 294
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 294 FSSIIENIKEDIAKNKEMKENIKKFREEAQKLENS 398
F S+ EN+KE++ +N+ +KKF K E S
Sbjct: 110 FCSLCENVKENVKENESKLNKLKKFLSNEGKEECS 144
>U13646-4|AAC24420.1| 211|Caenorhabditis elegans Hypothetical
protein ZK783.3 protein.
Length = 211
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 29/42 (69%)
Frame = +3
Query: 300 SIIENIKEDIAKNKEMKENIKKFREEAQKLENSEALQAARKK 425
+I+ IK++ K K MKE K+ +++++ +N+E ++ +++K
Sbjct: 108 TIMSEIKKEELKEKGMKEEKKEEKKDSRSEKNTENMKHSKQK 149
>Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical
protein C33D9.5 protein.
Length = 472
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 309 ENIKEDIAKNKEMKENIKKFRE--EAQKLENSEALQAARKK 425
E +KE+ K KE+ E IKK +E + Q +E ++ ++K
Sbjct: 293 EILKEEEIKRKELSEQIKKIQELKDRQNVEKDREIEDLKEK 333
>Z54271-2|CAA91033.1| 309|Caenorhabditis elegans Hypothetical
protein F21D5.2 protein.
Length = 309
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +3
Query: 339 KEMKENIKKFREEAQKLENSEALQA 413
KEM E KK EEA+K E SEA+ A
Sbjct: 55 KEMDERHKKELEEAKKPEESEAVPA 79
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 610 PLYPPQHCEPSSRCPP 563
P+ PPQ C P CPP
Sbjct: 49 PICPPQFCPPPPMCPP 64
>Z83231-4|CAB05752.1| 356|Caenorhabditis elegans Hypothetical
protein F57G9.4 protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -1
Query: 416 SCLQSFRV---LKFLCLLSELLYILFHFLVLCNILFDVLYY**EESFPCRILPTFLY 255
S Q F+V L+ L L + L++++ + LC I L+Y F C + FL+
Sbjct: 231 SVSQQFQVKENLRALYLGTRLVFVVLSCIALCGIGITALFYDLIPPFCCHFVENFLF 287
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 327 IAKNKEMKENIKKFREEAQKLE 392
I KE KEN+KK RE + LE
Sbjct: 919 IGSVKEFKENLKKLRESCRMLE 940
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,925
Number of Sequences: 27780
Number of extensions: 274990
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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