Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17f01f
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.91 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 592  HCEPSSRCPP 563
            HC P+ RCPP
Sbjct: 1694 HCAPNRRCPP 1703


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 480 IEGIKGKMEHVLE 518
           IEGIK K++H LE
Sbjct: 51  IEGIKEKLDHFLE 63


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 480 IEGIKGKMEHVLE 518
           IEGIK K++H LE
Sbjct: 51  IEGIKEKLDHFLE 63


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 528 KSDIAKKSRENYGGHLEDGSQCCGGYSG 611
           K+DI +  R    GH + GS+  GG  G
Sbjct: 72  KTDIEETGRGKGRGHGKGGSRGRGGNRG 99


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 202 RTHFQRAGLYNNCLYACIFDNR 137
           + HFQ     ++ LY C F NR
Sbjct: 22  KRHFQDKHEQSDTLYVCEFCNR 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,882
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)