Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e22r
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   4.7  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   6.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   8.1  

>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 428 LKYIDNYQTNTVNQSYILFKNNHHLFVVW 514
           LK +      T  QSY+ FKN+  +++ W
Sbjct: 226 LKEVQEVYPATGGQSYLSFKNSEMMYLTW 254


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 535 FRQCLIFLVMSNLKEALLAIIFTFSTSAEI*YYMKKKKQFLNGHSHLSVSNRPSHHIATF 714
           F  C+I +  S  K+ALLA++     S  +  Y++ K Q   G    + SN    +I T 
Sbjct: 306 FGVCMILIWKSFAKQALLAVLPPIFKSLRL-SYLEPKSQSEKGIRAATGSNHSPGNIGTE 364

Query: 715 L 717
           L
Sbjct: 365 L 365


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 717 EERHHHYGNI*KNKTYKIIQNKINSFQDISP 809
           +E HH+Y    + + YK ++ K    +D+ P
Sbjct: 873 DEEHHYYKTGFRKRVYKYLKIKDKKSKDVDP 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,292
Number of Sequences: 5004
Number of extensions: 57567
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)