Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e22f
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY308063-1|AAQ75554.1| 290|Caenorhabditis elegans EXC-4 protein. 111 5e-25
AL132876-18|CAD21669.2| 290|Caenorhabditis elegans Hypothetical... 111 5e-25
Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical... 36 0.023
AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical... 36 0.023
Z66520-6|CAA91385.1| 226|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z70783-7|CAA94858.1| 239|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical... 28 6.0
>AY308063-1|AAQ75554.1| 290|Caenorhabditis elegans EXC-4 protein.
Length = 290
Score = 111 bits (267), Expect = 5e-25
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 22/203 (10%)
Frame = +1
Query: 187 EIAENGTANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDM 366
+I NG P +EL +KAS ID RR GA LFCQE++M+LY L E+ ++V TV++
Sbjct: 6 QIQSNGDPQSK-PLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNV 64
Query: 367 QKPPPDFRTNFEATHPPILI--DNGLAILENEKIERHIMKSVPGGH-NLFVQDKEVASLI 537
F+ NF PPI+I + L +N +IE I + LF +D I
Sbjct: 65 NSEA--FKKNFLGAQPPIMIEEEKELTYTDNREIEGRIFHLAKEFNVPLFEKDPSAEKRI 122
Query: 538 ENLYSKLKLVL---VRKDEQKS---------AALRAH-------LGRIDGLLERRETRFL 660
ENLY KL L V D+ K A ++ H L ID LL R++R+L
Sbjct: 123 ENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNIDQLLSERKSRYL 182
Query: 661 TGDTMCCFDCELMPRLQHIRVAG 729
G++M +DCELMPRL HIR+ G
Sbjct: 183 LGNSMTEYDCELMPRLHHIRIIG 205
>AL132876-18|CAD21669.2| 290|Caenorhabditis elegans Hypothetical
protein Y105E8A.22 protein.
Length = 290
Score = 111 bits (267), Expect = 5e-25
Identities = 78/203 (38%), Positives = 106/203 (52%), Gaps = 22/203 (10%)
Frame = +1
Query: 187 EIAENGTANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDM 366
+I NG P +EL +KAS ID RR GA LFCQE++M+LY L E+ ++V TV++
Sbjct: 6 QIQSNGDPQSK-PLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNV 64
Query: 367 QKPPPDFRTNFEATHPPILI--DNGLAILENEKIERHIMKSVPGGH-NLFVQDKEVASLI 537
F+ NF PPI+I + L +N +IE I + LF +D I
Sbjct: 65 NSEA--FKKNFLGAQPPIMIEEEKELTYTDNREIEGRIFHLAKEFNVPLFEKDPSAEKRI 122
Query: 538 ENLYSKLKLVL---VRKDEQKS---------AALRAH-------LGRIDGLLERRETRFL 660
ENLY KL L V D+ K A ++ H L ID LL R++R+L
Sbjct: 123 ENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNIDQLLSERKSRYL 182
Query: 661 TGDTMCCFDCELMPRLQHIRVAG 729
G++M +DCELMPRL HIR+ G
Sbjct: 183 LGNSMTEYDCELMPRLHHIRIIG 205
>Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical
protein F26H11.5 protein.
Length = 238
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +1
Query: 571 VRKDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDCELMPRLQHIRVAGK 732
V+ E + A L R+D L +ET+FL D + DC ++ RL IRVA K
Sbjct: 116 VKDVEHRDTAFNTELLRLDKYLSEQETKFLISDDVTHIDCLVLTRLHSIRVAAK 169
>AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical
protein Y39B6A.43b protein.
Length = 734
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 511 QDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 657
Q ++ ENL+ +LKL L+R++ Q A L R DGLL R E RF
Sbjct: 650 QQSTSSTSAENLH-ELKLQLIRREMQNQDRFSAVLDRADGLLARMEQRF 697
>AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical
protein Y39B6A.43a protein.
Length = 731
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 511 QDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 657
Q ++ ENL+ +LKL L+R++ Q A L R DGLL R E RF
Sbjct: 647 QQSTSSTSAENLH-ELKLQLIRREMQNQDRFSAVLDRADGLLARMEQRF 694
>Z66520-6|CAA91385.1| 226|Caenorhabditis elegans Hypothetical
protein F49E12.8 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 514 DKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 657
D E ++I+ L S+ KL +VR++EQ+ + + RRE+ F
Sbjct: 170 DDEDLTVIQQLKSRRKLSMVRQEEQEELTASMDRMNVGSVHSRRESGF 217
>Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical
protein K03D10.3 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 292 QEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTN 396
+ Y ++ +++ +K + + +D +KPP + RTN
Sbjct: 38 KRYMVEKFIINTVKKVVAVIIHIDFRKPPQEVRTN 72
>Z70783-7|CAA94858.1| 239|Caenorhabditis elegans Hypothetical
protein ZK856.10 protein.
Length = 239
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 223 PEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAE 327
P ++ +I+A I R+G CL Q +F D+++ AE
Sbjct: 79 PFVDEVIEAKVIGSSRQGLCLTIQ-FFEDIFVPAE 112
>AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical
protein K01A2.1 protein.
Length = 287
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 376 PPDFRTNFEATHPPILIDNGLAILENEKIERHIMKS 483
P D RT F A HP + ID + L E+I + ++S
Sbjct: 147 PKDGRTLFSARHPTVTIDKRIKKLAAERIITNKIRS 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,438
Number of Sequences: 27780
Number of extensions: 371745
Number of successful extensions: 1015
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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