Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e21f
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.    30   1.5  
AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical ...    30   1.5  
AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z50016-8|CAA90315.1|  393|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF125459-1|AAD12837.1|  189|Caenorhabditis elegans Hypothetical ...    29   4.5  
AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AF408761-1|AAO27840.1|  741|Caenorhabditis elegans Rap1GAP protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 320 VVGDAIQFEGAEA--GGVDTFYGATNFQDVFSSRK 222
           ++GD++Q  G +   GG+DT +  T  Q VFS  K
Sbjct: 327 MIGDSVQLNGFQKYRGGLDTAHNQTGHQSVFSEFK 361


>AF016660-2|AAB66048.2|  811|Caenorhabditis elegans Hypothetical
           protein F53A10.2c protein.
          Length = 811

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 320 VVGDAIQFEGAEA--GGVDTFYGATNFQDVFSSRK 222
           ++GD++Q  G +   GG+DT +  T  Q VFS  K
Sbjct: 397 MIGDSVQLNGFQKYRGGLDTAHNQTGHQSVFSEFK 431


>AF016660-1|AAK71368.1|  742|Caenorhabditis elegans Hypothetical
           protein F53A10.2a protein.
          Length = 742

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 320 VVGDAIQFEGAEA--GGVDTFYGATNFQDVFSSRK 222
           ++GD++Q  G +   GG+DT +  T  Q VFS  K
Sbjct: 328 MIGDSVQLNGFQKYRGGLDTAHNQTGHQSVFSEFK 362


>Z50016-8|CAA90315.1|  393|Caenorhabditis elegans Hypothetical
           protein T21C12.2 protein.
          Length = 393

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 482 DNSTSANAHVGHGDSSRSVCGQFTVENLD 396
           DNS   N  V HGD  + VC  F VE+LD
Sbjct: 77  DNSELGNHLVQHGDGVKDVC--FEVEDLD 103


>AF125459-1|AAD12837.1|  189|Caenorhabditis elegans Hypothetical
           protein Y25C1A.6 protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = -1

Query: 605 EVADASSDLTPEQVQLDFRVDFSNRQLKFD---VPDGVSVNTDSDN 477
           ++++ S  LTPE +QLD  + +S  +L+FD    P+ +  N + D+
Sbjct: 108 DLSEESYPLTPEPIQLDTCLTWSPVELQFDPFAEPEPIFYNEEMDS 153


>AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical
           protein B0524.1 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 304 SNSKVLKPAALTPSTEPRTFRMFSPPGRCQPPAYSLFTI-GSNGDKRNW 161
           +  K+ K            FR+F PP R  PP  + F +  +N + R+W
Sbjct: 34  TQKKLQKSKKTAKKRRDEEFRIFFPPPRVNPPIKTPFRLHNTNCEHRDW 82


>Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical
           protein T15H9.6 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 126 VDGIIENWISRAQLRLSPFDPIVNNEYAGGWHLPGGENILKVRGS 260
           +DG++++W+ +  +   P D + N   AGG  +P G   L V  S
Sbjct: 62  LDGLVKDWVQKTTISRIPKDQMFN---AGGKLIPFGSYRLGVHSS 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,895
Number of Sequences: 27780
Number of extensions: 273773
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)