Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e20f
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    28   1.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.0  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   3.0  

>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 280 YVVMRKLVLSSETGSLNTYQPAMQQEV*NYSFFFYNVPTLKRF 408
           Y+ M +   ++   S N   PA  Q V   +  F N P LKRF
Sbjct: 166 YIPMTQTATTAVNNSTNYVNPAPLQHVMPNAEIFSNTPPLKRF 208


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 303 NEFPHNYI*DATDDQHSNSSHQANCPRGNR 214
           NE P NY  D  +  HS  S Q +   GN+
Sbjct: 692 NEMPKNYARDNYEALHSQESRQRSSVAGNK 721


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 297 TRSIFGNGFTEYLPTCYAARSIKLQFFFL*CTYVKTI 407
           T+S  G  +TEY+ +     SI L + F   TY+KTI
Sbjct: 287 TKSYLGWRWTEYITSFMGFLSIILIYLFCEETYLKTI 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,241
Number of Sequences: 5004
Number of extensions: 49139
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)