Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e20f
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1215 - 28474019-28474079,28475658-28476739                       30   1.8  
12_02_0872 + 23884715-23885770                                         28   7.2  

>06_03_1215 - 28474019-28474079,28475658-28476739
          Length = 380

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 309 FGNGFTEYLPTCYAARSIKLQFFFL*CTYVKTIRI 413
           F   FTEY  +C+  R+ KL+ F   C+Y K +R+
Sbjct: 274 FRASFTEY--SCFRLRAPKLRVFEWRCSYAKEVRV 306


>12_02_0872 + 23884715-23885770
          Length = 351

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 577 LCRLLNVLLACVMYRSCEK 633
           LC +L ++++C+ YRSC +
Sbjct: 314 LCVVLEIIVSCMFYRSCRR 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,578,447
Number of Sequences: 37544
Number of extensions: 270046
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)