Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e19f
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 28 1.3
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 27 2.3
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 3.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 3.1
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 26 4.1
SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 5.4
SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr ... 26 5.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 7.1
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.4
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 285 PVVVSQVKYLMFTLPLTIPNSLRRITTRM*ASYE*HMPSTSAQISSRV 428
P ++ V YL+ T+ T+P +L I M A+ + PS A + R+
Sbjct: 288 PNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRI 335
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 PTTTTFQLLPVSMENSTILHTVALSLDLPVVVSQVKYLMFT--LPLTIPNSL 350
P+ T +L ++IL T+ SL +VVS Y +FT LP T S+
Sbjct: 89 PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSV 140
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 96 RLLAVQLQTAASTATAKVRTETIVPIESN 10
R L + + A +A+ K+ TE I+P ESN
Sbjct: 605 RQLHIDFENPAVSASEKLSTEEIIPQESN 633
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 522 PSDALPP*TVVPHPSRSTKIPWGITTPCWIIAPCWI 415
PSDA T VP + S PW TTP P W+
Sbjct: 21 PSDAQSSPTFVPSANPSLTTPWLQTTPS-ANRPTWL 55
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 371 HPCRNSPQRIGDG*RQSEHKIFHLA--HYDGKIQR 273
H C +P+ I G RQ E ++H+A +D KI R
Sbjct: 11 HLCMRNPKLIRIGLRQVESIVYHVAKPSHDDKIPR 45
>SPAC750.03c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 593 DHDPYTGSCSFLCWS 549
DH+PYT S S +C S
Sbjct: 91 DHEPYTASLSHICHS 105
>SPBC1348.04 |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 145
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 593 DHDPYTGSCSFLCWS 549
DH+PYT S S +C S
Sbjct: 91 DHEPYTASLSHICHS 105
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 211 LPFNCYLFPWRILRSCIPSHYRWIFP 288
LP + + F W +C P H WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +3
Query: 177 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVVVSQVKYLMFTLPLTIPNS 347
N L+ F T T LLP++ I ++TV LSL + V S V+ L+F + +
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349
Query: 348 LRRITTRM 371
+ +T ++
Sbjct: 350 VNELTLKL 357
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 1 EISIRLDRNNGFRSHLSRSR 60
E+S+RL+ NGF H+ +R
Sbjct: 609 ELSVRLNGGNGFPGHVHNNR 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,092
Number of Sequences: 5004
Number of extensions: 62890
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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