Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e19f
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    31   0.53 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    30   1.2  
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    28   5.0  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 370 CEHRTSNTCHPLRPKYPAGCYYPTRCRNTPGYFC 471
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 394 CHPLRPKYPAGCYYPTRCRNTPG 462
           C P+RPK P G   P  CR  PG
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPG 124


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 370  CEHRTS--NT-CHPLRPKYPAGCYYPTRCRNTPGY 465
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 147 YSYPS*INGSNSALVLFSPTTTTFQLL 227
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 3/152 (1%)
 Frame = +2

Query: 179 QCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQFS--- 349
           +C G ++     L+ A CF  +    +Y   + G   RS  G    V     HP ++   
Sbjct: 83  RCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGG--HRSGSGSPHRVTAVSIHPWYNIGF 140

Query: 350 EENYDKDVSIVRVTHAIHFGPNXXXXXXXXXXXXXXXXXXXDLLGWGTTVQGGSASDGNL 529
             +YD   +I+R+   ++                        + GWG+T++G S S   L
Sbjct: 141 PSSYD--FAIMRIHPPVNTSTTARPICLPSLPAVENRLCV--VTGWGSTIEGSSLSAPTL 196

Query: 530 HKLELIVTNKENCRNQYKDHDRVVTDHKFCAG 625
            ++ + + +   C +      R+      CAG
Sbjct: 197 REIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG 228


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +2

Query: 167 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPQF 346
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 347 SEENYDKDVSI 379
            E +   ++ I
Sbjct: 366 RETSKTSNLVI 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,677
Number of Sequences: 27780
Number of extensions: 370304
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)