Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e16f
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 29 0.52
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.6
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 27 2.1
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 26 4.9
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 4.9
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 8.5
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.5
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 25 8.5
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 25 8.5
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 29.5 bits (63), Expect = 0.52
Identities = 33/135 (24%), Positives = 59/135 (43%)
Frame = +3
Query: 228 VVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 407
V+I HG G+ + K F D ++ +D S A ++ + +
Sbjct: 23 VLIFHGLLGSKRNWRSLAKK--FSCKLDRDIYAIDQRCHGDSP-CVAPLSYSAMALDAFQ 79
Query: 408 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 587
F+K+ KL +K I+G ++GA A VT KV ++ +D S W ++ R A
Sbjct: 80 FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133
Query: 588 QYVEVIHTDGSGVNK 632
+ ++I D + + K
Sbjct: 134 YFRKMIQIDEANITK 148
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 848 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 906
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 907 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 943
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 892 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 950
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 951 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 987
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 936 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 994
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 995 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1031
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 980 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1038
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 1039 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1075
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 293
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1082
Query: 294 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 407
TS +V+ + +T + V TG G+ +T
Sbjct: 1083 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1119
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +3
Query: 132 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTI 272
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 1068 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTV 1120
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +3
Query: 126 YYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTS 305
YY++ A SI ++ F +GN + + + I + + + T I PIV S
Sbjct: 94 YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153
Query: 306 GDYNVIVVDWSSFSLSTYSTAV 371
G Y + ++S L + T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 671 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 570
+E ++S ++ ++FV S VN F+V S+ S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 586 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 497
+ F +FS EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = +3
Query: 123 YYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLT 302
YY + E HF D F + + + + A++ + P+ + +T
Sbjct: 650 YYPVFQPAPTEFSYPEKHFYFAVDNFNVFISKEVVRLFKTLYETIASSLVTPVTPNKLVT 709
Query: 303 SGDYNVIVVDWSSFSLS 353
S NV+ + +FSLS
Sbjct: 710 SDYKNVLKIRTRTFSLS 726
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 156 SNFSVHCYSNNIYLNFQIAP 97
+NF+ C N +LNFQI P
Sbjct: 417 NNFTSTCAFENSHLNFQITP 436
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 597 EVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQP 695
EV+ + VNK G IG ++ FV+ LV P
Sbjct: 86 EVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPP 118
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 689 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 594
DK K+ V NSN +++ F ++G+N+FN
Sbjct: 72 DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,357
Number of Sequences: 5004
Number of extensions: 63723
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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