Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e15f
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    28   1.2  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    27   2.7  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   3.5  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   6.1  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    26   6.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   6.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.1  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.1  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    25   8.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.1  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   8.1  

>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 589 KYDIWFFENAKVAHQHAVDTYLG 657
           KY  W F NA + H + V  YLG
Sbjct: 105 KYKCWIFTNAYIVHANRVLKYLG 127


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 326 FNGTVVLNKSNSTGRFKTATCKNTQSYPKRKTIPLY 433
           F+G+ V++K+NS+G F++         P+ + + +Y
Sbjct: 75  FSGSAVIDKTNSSGFFESGFFSRKSVDPEERIVLIY 110


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 262 ISIHWDGPADRVFEDCFNFGSLQWYGGPEQKQQYWPIQN 378
           I +HWD  +  ++ED   F ++    GP    +Y  I N
Sbjct: 37  IVVHWDKMSPDLWEDILQFDAIVVGPGPGHPAEYSSILN 75


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = +1

Query: 202 DEEVIFDINTAYDEESGGYRISIHWDGPADRVFEDCFNFG-SLQWYGGPEQKQQYWPIQN 378
           +E+ ++ +N    E S      I+WDGP  R+    + F    + Y   E          
Sbjct: 153 NEDYLYSVNVVSRELS-----PIYWDGPVYRILRGTWFFSRGDKLYPCEENLATQVEEGY 207

Query: 379 SNLQKYSIISKEEDNSAVSERYW 447
            N   Y   S E+D++A   + W
Sbjct: 208 LNSCPYREFSNEKDSAAAQSKTW 230


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 651 ISVYSVLVRDLCVFKEPDIVFEAVMCAFTG 562
           I ++ VL   LC   E D +F+   C F+G
Sbjct: 322 IPLHDVLRSKLCDLYENDCIFDKFECTFSG 351


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 197 LMMRR*SSISTQPTMKSPVATALAYIGMDLRTEFLKTASTLV 322
           LMM   +  ST PTM + +A A   +  ++  +FLK  + LV
Sbjct: 472 LMMEHSNDFSTMPTMIASIAVAFQTLFENV-CDFLKVRAALV 512


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = +1

Query: 184  RRVASDDEEVIFDINTAYDEESGGYRISIHWDGPADRVFEDCFNFGSLQWYGGPEQKQQY 363
            R + SD   V  D   + +E S     +   D   + + ED  N  + + +  P ++   
Sbjct: 3954 RELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLL 4013

Query: 364  WPIQNSNLQKYS-----IISKEEDNSAVSER 441
               Q SN Q  +     ++SKE+DN A+ ++
Sbjct: 4014 ETEQKSNEQSAANNESDLVSKEDDNKALEDK 4044


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 65  SALYQKHPYNATYWW--KNMKTEDFF 136
           S+++QK+ Y   YW    ++ TED F
Sbjct: 526 SSIFQKYNYGGKYWCPSPSLSTEDLF 551


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 349 QKQQY-WPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQ 480
           +K  Y W ++++ +QK S +  +E+     ER+ ++  G+Y  ++
Sbjct: 282 RKYMYIWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALE 326


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 313 NFGSLQWYGGPEQKQQYWPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAP 492
           +FG+   Y     K   W  QN+      +IS  +D S+V  +  + S+G + Y    AP
Sbjct: 181 SFGTSLSYYNRSSKPSDWNQQNNGGHLSGVISITQDVSSVPLQSSVFSSGNHAYHASMAP 240


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 347 NKSNSTGRFKTATCKNTQSYPKRKTIPLYRNATG*TRPANTSTCNPK 487
           N S  +  F T T K    +P     PL++ A       ++  C+PK
Sbjct: 6   NSSTISPTFSTPTKKRNLVFPNSPITPLHQQALLGRNGRSSKRCSPK 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,175
Number of Sequences: 5004
Number of extensions: 62013
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)