Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e15f
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-1|CAB03947.1|  404|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF077534-6|AAC26288.1|  199|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z81481-1|CAB03947.1|  404|Caenorhabditis elegans Hypothetical
           protein C38D9.1 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +1

Query: 370 IQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAPLFIDYHNVEDNHICFIAEV 549
           ++NSN  + SI    +    +SE+ W     +YF  +P+ P   +      N IC   E+
Sbjct: 71  VRNSNDLRCSINPPSDVPHKISEKEWCRKFVEYFNGEPQEPSLQNMPEKVWNEICAKMEL 130

Query: 550 AAPYSSKRTHNSLK 591
              + +++    L+
Sbjct: 131 CDRFVARKVSRILR 144


>Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical
           protein ZC247.2 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -1

Query: 251 PDSSS*AVLISKITSSSSEATRRPMW--PVSKV 159
           PDS+  + ++S  T+S S+AT   +W  PV+KV
Sbjct: 151 PDSTEQSSMVSSPTASVSDATNYSLWIVPVTKV 183


>AF077534-6|AAC26288.1|  199|Caenorhabditis elegans Hypothetical
           protein K07D4.4 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 VASDDEEVIFDINTAYDEESGGYR 261
           V S DE  I D  T+ DE+ GGYR
Sbjct: 51  VKSQDEVFIMDHPTSPDEQQGGYR 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,723,135
Number of Sequences: 27780
Number of extensions: 360752
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)