Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e13r
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 42 1e-04
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.031
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.16
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.29
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 2.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.7
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 27 4.7
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 26 6.2
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 8.2
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 8.2
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 26 8.2
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 8.2
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 8.2
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 8.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 41.9 bits (94), Expect = 1e-04
Identities = 57/220 (25%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Frame = -1
Query: 797 PKTIARCL*TATSTP*G----IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT* 630
P T C T+TS P G + T VP +S++ + P T S+D S P T
Sbjct: 223 PTTSTSCT-TSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 281
Query: 629 MSSLLTGTDLL--------IQTTILPPLASRMSVAP--SATFWFG-SSTMLEAIGTKCIX 483
+S T T + + T+ P S S P ++T G SS+ L + T C
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTT 341
Query: 482 XXXXXXXXXXVMPDAKPVVAPHALQVWT--PPDHSGEETLTHSTAMLVITSNASTRTGVL 309
P P V P + + PP S T T S+ +L +++ +T T +
Sbjct: 342 STSIPPTGNSTTP-VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Query: 308 LVFS-----TPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 204
+ TP V PTS+ T N ++ +T P+
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 36.7 bits (81), Expect = 0.004
Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 23/221 (10%)
Frame = -1
Query: 797 PKTIARCL*TATSTP*G----IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT* 630
P T C + + P G + T VP +S++ + P T S+D S P T
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT 225
Query: 629 MSSLLTGTDL------LIQTTILPPL------ASRMSVAPSATFWFGS-STMLEAIGTKC 489
+S T T + + T I P + ++ + + P++T + S+ L T C
Sbjct: 226 STSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSC 285
Query: 488 IXXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTR---- 321
P V TPP + + S++ L TS + T
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSI 345
Query: 320 --TGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 204
TG TP V PTST + P P + S+ + +PL
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPL 386
Score = 25.8 bits (54), Expect = 8.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 746 IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPP 573
+ T +P E+ +S T T+ +TP T S+ S T SS L T T T +PP
Sbjct: 64 LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPP 123
Query: 572 LASRMSVAPSAT 537
S++ T
Sbjct: 124 TGGSSSLSTPIT 135
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.9 bits (74), Expect = 0.031
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 11/253 (4%)
Frame = -1
Query: 764 TSTP*GIHTTAPTEVPLSSST--DGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLI 594
TSTP T T P++SST + +T T L++ P SS +T + +L
Sbjct: 1184 TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSILN 1243
Query: 593 QTTILPPLASRMSVAPSATFWFGSSTMLEA---IGTKCIXXXXXXXXXXXVMPDAKPVVA 423
+T P+ S SV S+T SST++ + I + V+ + P+ +
Sbjct: 1244 SST---PITS-SSVLNSST-PITSSTVVNSSTPITSSTALNTSIPITSSSVLNSSTPITS 1298
Query: 422 PHALQVWTPPDHSGE-ETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPN 246
AL T S + T T+ V+ ++ + +L STP + +ST + + T
Sbjct: 1299 STALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTP--ITSSTVVNSST-- 1354
Query: 245 PDAGSTPAHTVAPLN*WHPVFVLTTWLEDAVVTSGKPSFPTAMVELC--IWATETLGSAD 72
P ST +T P+ V T VV S P + ++ I ++ L S+
Sbjct: 1355 PITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSST 1414
Query: 71 P--ASTV*ELATP 39
P +STV +TP
Sbjct: 1415 PITSSTVVNTSTP 1427
Score = 32.3 bits (70), Expect = 0.094
Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 10/252 (3%)
Frame = -1
Query: 764 TSTP*GIHTTAPTEVPLSSST--DGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 591
TSTP T T P++SST + +T T L++ P +T + +L
Sbjct: 1496 TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTP-----------ITSSSVLNS 1544
Query: 590 TTILPPLASRMSVAPSATFWFGSSTMLEA---IGTKCIXXXXXXXXXXXVMPDAKPVVAP 420
+T P+ S SV S+T SST++ I + + + + P+ +
Sbjct: 1545 ST---PITS-SSVLNSST-PITSSTVVNTSTPITSSSVVNSSTPITSSTALNTSTPITSS 1599
Query: 419 HALQVWTP-PDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNP 243
L TP + T T T+ V+ S+ + +L STP T A T P
Sbjct: 1600 SVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSST----ALNTSPP 1655
Query: 242 DAGSTPAHTVAPLN*WHPVFVLTTWLEDAVVTSGKP-SFPTAM-VELCIWATETLGSADP 69
ST ++ P+ V T VV S P + TA+ I ++ L S+ P
Sbjct: 1656 ITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTP 1715
Query: 68 --ASTV*ELATP 39
+STV +TP
Sbjct: 1716 ITSSTVVNTSTP 1727
Score = 31.9 bits (69), Expect = 0.12
Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 19/266 (7%)
Frame = -1
Query: 764 TSTP*GIHTTAPTEVPLSSST--DGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 591
TSTP T T P++SST + +T T L+S P SS + ++
Sbjct: 2204 TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVN 2263
Query: 590 TTILPPLASRMSVAPSATFWFGSSTMLEA---IGTKCIXXXXXXXXXXXVMPDAKPVVAP 420
T+ P+ S V S SST++ I + + + + P+ +
Sbjct: 2264 TS--TPITSSTVVNSSTP--ITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSS 2319
Query: 419 HALQVWTPPDHSG-EETLTHSTAMLVITSNASTRTGVLLVFSTP----AVMPTSTRMAA- 258
L TP S T T T+ V+ S+ + ++ STP + TST + +
Sbjct: 2320 SVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSS 2379
Query: 257 ---GTPNPDAGSTPAHTVAPLN*WHPVFVLTTWLEDAVVTSGKPSFPTAMV---ELCIWA 96
+ P ST +T P+ V +T + + V + S ++ V I +
Sbjct: 2380 SVLNSSTPITSSTVVNTSTPIT-SSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITS 2438
Query: 95 TETLGSADP--ASTV*ELATPGLSKS 24
+ L S+ P +STV +TP S S
Sbjct: 2439 SSVLNSSTPITSSTVVNSSTPITSSS 2464
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.5 bits (68), Expect = 0.16
Identities = 24/121 (19%), Positives = 51/121 (42%)
Frame = -1
Query: 368 THSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPLN*WHP 189
T ST + S+ S +T L+ S+P + + T + TP H++ P N
Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTP------ALTHSITPSN---- 588
Query: 188 VFVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV*ELATPGLSKSNETKH 9
T +++ S + ++++ +C T + S AS + L + +S + ++
Sbjct: 589 -----TSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEF 643
Query: 8 I 6
+
Sbjct: 644 V 644
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.29
Identities = 61/272 (22%), Positives = 108/272 (39%), Gaps = 11/272 (4%)
Frame = -1
Query: 839 SGANNSVLAFHQTEPKTIARCL*TATS------TP*GIHTTAPTEVPL-SSSTDGTTMAT 681
S A +S LA T ++A T++S T + +++ T L SSST+ TT AT
Sbjct: 112 SSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSAT 171
Query: 680 P--R*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLE 507
P T SS + + SS L + L T+ +S S A S + SS++
Sbjct: 172 PTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNS--ATSSSLAS 229
Query: 506 AIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNAS 327
+ + + P+ + ++ T + +++++L S+
Sbjct: 230 SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLL--PSSTP 287
Query: 326 TRTGVLLVFSTPAVMPTSTRMAA--GTPNPDAGSTPAHTVAPLN*WHPVFVLTTWLEDAV 153
+ T + ST A +ST + + T A STP +V+ N +T L
Sbjct: 288 SSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVN 347
Query: 152 VTSGKPSFPTAMVELCIWATETLGSADPASTV 57
T+ + T + + T T S+ P ++V
Sbjct: 348 STTATSASSTPLTSVNS-TTATSASSTPLTSV 378
Score = 29.5 bits (63), Expect = 0.66
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -1
Query: 770 TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS---SDPPSLPFKT*MSSLLTGTDL 600
T TSTP T APT +SS TT P + S S+ P T SS T
Sbjct: 603 TPTSTPLSNSTVAPTST-FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSG 661
Query: 599 LIQTTILPPLASRMSVAPSATF 534
L ++ P +S S+ P++TF
Sbjct: 662 LPTSSASTP-SSNSSIVPTSTF 682
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.2
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Frame = +2
Query: 377 PPHCGPA-GSKPV----TRA-GRPPAWRPALPTT*APKLKPI----RCTW--FQLPPALL 520
PP P+ G +P +RA PPA PA+P AP L P+ R + PP+L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 521 MSQTKKLPRARPTS---GTPAAAVL 586
S LP + P S G PAA L
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.5
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = -1
Query: 434 PVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAG 255
PV AP A Q+ G++ S+ + ++++ ST V+ P PT A
Sbjct: 1270 PVAAPTAQQI-----QPGKQASAVSSNVPAVSASISTPPAVVPTVQHP--QPTKQIPTAA 1322
Query: 254 TPNPDAGSTPAHTV-----APLN*WHPVFVLTTWLEDAVVTSGKPSFP 126
+P ST +T APL L + AV TS KP P
Sbjct: 1323 VKDPSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIP 1370
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 120 NGGTLHMGNGNFGK 79
NGG +H G GNFGK
Sbjct: 706 NGGLIHQGVGNFGK 719
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -1
Query: 755 P*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 606
P + TT PT VP SSST + TP+ + P L +T ++ LT +
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -2
Query: 868 PSTMNYWAPEAAPIIQYWLFTRQNQKQSPGACERQHQLREEFTLPRQPRY 719
PST E YW+ ++ QS G+ + H L F P+ +
Sbjct: 438 PSTFALDLREYQKQALYWMCCKEEGVQSDGSAPKLHPLWSRFRFPKDSEF 487
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 758 TP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 591
TP +++ P E P S S TM P S+PF T + L G ++ Q
Sbjct: 401 TPSFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQ 456
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 13 LVSFDLERPGVASSQTVEAGSALPKV 90
++++D+ RP + S+ VE SAL +
Sbjct: 156 IITYDVRRPNLGSTSFVEMSSALSNI 181
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 8.2
Identities = 46/204 (22%), Positives = 71/204 (34%), Gaps = 4/204 (1%)
Frame = -1
Query: 770 TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 591
T T TP TT V + TM TP ++ P T M T T ++ +
Sbjct: 114 TTTITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTTTTPMV-E 172
Query: 590 TTILPPLASRMSVAPSATFWFGSSTMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHAL 411
TT +P + + + A + + A+ T P + ++ P
Sbjct: 173 TTTIPTVETMTTPMVEAM----TILPMAAMTTPMEETTTTPMEETTTTPMVETMITPMVE 228
Query: 410 QVWTPPDHSGE---ETLTHSTAM-LVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNP 243
+ TP + G T+ +T M +IT T T +TP T+T M P
Sbjct: 229 AMTTPTEVVGRSMVSTIRTTTPMEAMITPTVETTTLPTAAMTTPVEETTTTPMVETMITP 288
Query: 242 DAGSTPAHTVAPLN*WHPVFVLTT 171
+T V + P V TT
Sbjct: 289 TVVTTTTPMVETM--ITPTVVTTT 310
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 341 TSNASTRTGVLLVFST-PAVMPTSTRMAA 258
+S+ASTR GV FST P+V P + AA
Sbjct: 55 SSSASTRKGVWNFFSTHPSVHPANDEHAA 83
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 58 TVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVST 183
T E G+ LPK HM++ T +V K+ D T + + V+T
Sbjct: 611 TSEKGNILPKTVETHMKALTTSVDKV--LDQTAEALEEFVNT 650
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 389 HSGEETLTHSTAMLVITSNASTRTGVLLVFSTPA 288
HSG+ T ++A+L + N + + V+L + TPA
Sbjct: 214 HSGKGWETFTSAVLQVALNRNRKGLVILAWGTPA 247
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 8.2
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 205 SGA-TV*AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVRVDAFDVMTSIAV 360
SGA T+ AG P GLG EVGI+A N K +A + S AV
Sbjct: 428 SGARTLPAGCGPCIGLGTGLLKDGEVGISATNRNFKGRMGSREALAYLASPAV 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,991,455
Number of Sequences: 5004
Number of extensions: 90053
Number of successful extensions: 304
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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