Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e13f
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.45
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.59
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.8
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 1.8
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.4
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 26 4.2
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 26 4.2
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 26 4.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 5.5
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.7
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.45
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 273 TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS---SDPPSLPFKT*MSSLLTGTDL 443
T TSTP T APT +SS TT P + S S+ P T SS T
Sbjct: 603 TPTSTPLSNSTVAPTST-FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSG 661
Query: 444 LIQTTILPPLASRMSVAPSATF 509
L ++ P +S S+ P++TF
Sbjct: 662 LPTSSASTP-SSNSSIVPTSTF 682
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.59
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 201 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPT--EVPLSSSTDGTTMATPR*T 374
P A STG S + + T+TS P ++T P VP +S++ +T P T
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 376
Query: 375 LSSDPPSLPFKT*MSSLLTGTDL 443
S+ S P + +S T T +
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSI 399
Score = 26.6 bits (56), Expect = 3.2
Identities = 27/116 (23%), Positives = 47/116 (40%)
Frame = +3
Query: 201 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS 380
P A STG S + + T+TS P ++T P + ++ T + T T S
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430
Query: 381 SDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGT 548
+ P T ++S T +T +P ++ ++ P T +ST + T
Sbjct: 431 TSVPYT--STPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTST 484
Score = 25.8 bits (54), Expect = 5.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 297 IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPP 470
+ T +P E+ +S T T+ +TP T S+ S T SS L T T T +PP
Sbjct: 64 LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPP 123
Query: 471 LASRMSVAPSAT 506
S++ T
Sbjct: 124 TGGSSSLSTPIT 135
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = -1
Query: 615 PPAWRPALPTT*APKLKPI----RCTW--FQLPPALLMSQTKKLPRARPTS---GTPAAA 463
PPA PA+P AP L P+ R + PP+L S LP + P S G PAA
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 462 VL 457
L
Sbjct: 448 PL 449
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 288 P*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 437
P + TT PT VP SSST + TP+ + P L +T ++ LT +
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 2.4
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
Frame = +3
Query: 198 APEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TL 377
A P++ T P T + T T TP TT V + TM TP
Sbjct: 89 AAMTTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEET 148
Query: 378 SSDPPSLPFKT*MSSLLTGTDLLIQTTI------LPPLASRMSVAPSA 503
++ P T M T T ++ TTI P+ M++ P A
Sbjct: 149 TTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMA 196
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 298 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 164
I HG D + + L +S KP++++GA + DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 298 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 164
I HG D + + L +S KP++++GA + DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 285 TP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 452
TP +++ P E P S S TM P S+PF T + L G ++ Q
Sbjct: 401 TPSFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQ 456
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 5.5
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Frame = +3
Query: 207 AAPIISTGFSPDRTKTIARCL*TATST-----P*GIHTTAPTEVPLSSSTDGTTMATPR* 371
+A + +T FS T+T + + T P H + T VP ++S + TT P
Sbjct: 41 SANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTT 100
Query: 372 TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPL--ASRMSVAPSAT 506
+L++ + P T ++S TT++PP + +V P T
Sbjct: 101 SLNTTTTTAPPTTHVNST---------TTVVPPTTHVNTTTVVPPTT 138
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 441 LLIQTTILPPLASRMSVAPSATFWFGSSTML 533
L +QT +PP+ S+ PS SS+++
Sbjct: 656 LFVQTNCIPPVTQASSLVPSKNNTASSSSLM 686
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,155
Number of Sequences: 5004
Number of extensions: 61562
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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