Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e10r
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    29   0.85 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    29   0.85 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    28   1.5  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   2.6  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.0  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +2

Query: 398 KPKAVTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKEL-ISNVLSFLTSKSSRVIR 574
           KP+    +S+ P  +     + S  +PKS  +TE  +N K++    ++ +      R +R
Sbjct: 167 KPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAANTKDIEEETMIEYSAQPVVRDLR 226

Query: 575 SPGSGIV*SSTERRSN*NGSKTG 643
              +  + ++ +R+    G K G
Sbjct: 227 QEAAQFLPAAFQRQKLAKGQKIG 249


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 756 IIQFLENPDEGESLDFEALILSMLERFRQTMITGSETLPVLDPFQLDRLSVDDQTIP 586
           +I++  NP+  E + FEA  + +   F   +    ET  +L P  L  LS    T+P
Sbjct: 666 VIEYCVNPESPEHVIFEADAMELWSTFLMYIQKLPETFTLLIPHLLYHLSQATSTLP 722


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 719 LSPSSGFSKNWIIALAPTTSFLGYAAASPRAA 814
           LSPSS  S N  +   P TSF+G  +  P A+
Sbjct: 80  LSPSSAQSHNTALITEPLTSFIGGTSQYPSAS 111


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 407 AVTLRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGS 586
           +V   S  PAS   +GT   +E      +  +IS     +S + +  TS  + ++  P +
Sbjct: 746 SVGYTSTFPASGTTSGTVEVVEPTAGTVTETVISGSVSFMSTITAHDTSSGAVIVVEPTA 805

Query: 587 GIV 595
           G V
Sbjct: 806 GTV 808


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
 Frame = +2

Query: 434 ASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV*SSTER 613
           +S + +GT  S     S   T   S+    I++  S  +S SS    SP S    SS+  
Sbjct: 119 SSLSYSGTISSTSIAPSMIGTRTSSSY--FITSSSSTPSSSSSSSSSSPSSSSSKSSSSS 176

Query: 614 RSN*NGSKTGNVSDPVIMVCLKRSSIERISASKSRLSPSSGFSKNWIIALAPTTSFLGYA 793
           +S+ + S +   S         +SS    S+SKS  SPSS  S +   + +  TS    +
Sbjct: 177 KSSSSSSSSSKSSSS--SSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPAS 234

Query: 794 AASPRA-ATNIQT 829
           ++S  A  +N +T
Sbjct: 235 SSSSGAIVSNAKT 247


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 674  GRP*SLDQKRYPFWTHFNWIASQLMIKRYRFLD 576
            G P  L+QKRY F     W+   ++ K  R +D
Sbjct: 2010 GCPQFLNQKRYDFVVREQWLRQTVLQKMARHMD 2042


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 294  LQEADVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLV 181
            +QEADV + ++G + +   +  D  + +F   FLG L+
Sbjct: 1043 IQEADVGVGIKGVEGQAASMSADYAIGQF--SFLGRLL 1078


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,688
Number of Sequences: 5004
Number of extensions: 67352
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)