Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e10r
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0583 + 24078766-24079800,24080585-24081643 31 0.90
02_01_0777 - 5785295-5787370,5787723-5788769 31 1.2
10_08_0518 + 18486315-18486462,18486495-18486712,18486763-184868... 31 1.6
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 31 1.6
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405... 30 2.1
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631... 30 2.7
02_02_0492 - 10907529-10907629,10907714-10907953,10908035-109080... 29 3.6
06_01_0549 + 3907305-3907553,3907894-3908051,3908293-3908587,390... 29 4.8
06_01_0536 + 3857426-3857674,3858015-3858172,3858414-3858708,385... 29 4.8
01_06_0716 - 31425189-31426460 28 8.4
>02_04_0583 + 24078766-24079800,24080585-24081643
Length = 697
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 228 DPVLSEFVSRFLGNLVPELLEVFETEINEIVTDIFFEIAQ 109
DP+L EF++RF+ L P L F T ++ ++ +A+
Sbjct: 75 DPLLDEFLARFVAALRPTLAAAFPTHARHVLDEMLRLVAE 114
>02_01_0777 - 5785295-5787370,5787723-5788769
Length = 1040
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -3
Query: 336 LLIHLNIREGMALNLQEADVAISLEGFQTEITGIFNDPVLSE-FVSRFL-GNLVPELLEV 163
LL+ N+ G+AL LQ D+ + T + E +V RFL N+V EL+++
Sbjct: 822 LLLGSNMSNGLALLLQRRDIESNQVRSHTAFLVMKLACTGGEPYVHRFLEANIVHELIDM 881
Query: 162 FETEINEIVTDIFFEIAQ 109
+ IN++ ++ + Q
Sbjct: 882 MQCNINDLQDSAYYALHQ 899
>10_08_0518 +
18486315-18486462,18486495-18486712,18486763-18486808,
18487436-18487709,18487797-18488052
Length = 313
Score = 30.7 bits (66), Expect = 1.6
Identities = 34/143 (23%), Positives = 63/143 (44%)
Frame = -3
Query: 843 YKYAFVCIFVAALGLAAAYPKNDVVGANAIIQFLENPDEGESLDFEALILSMLERFRQTM 664
Y + + VAA G A P G + + P E E+ +++ L+ +L
Sbjct: 66 YSWRHQMLAVAAAGYRAVAPDWRGYGLS------DQPPEPEAAEYDDLVEDLLA------ 113
Query: 663 ITGSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINSLTFDIISVLRG 484
I + +P + F+ QT+ L L +T+E+L +++ E + +DI V+R
Sbjct: 114 ILDALAVPKVSSFESYSCM---QTVKLYSLIVTVEELVLQQPGRAEADFGKYDIRRVVRT 170
Query: 483 LFGLSIDGEVPVIALDAGKYDLS 415
++ L E+P+ D DL+
Sbjct: 171 IYILFSRNEIPIAKEDQEIMDLA 193
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 822 IFVAALGLAAAYPKNDVVGANAIIQFLENPDEGESLDFEALILSMLER 679
+F+ L YP N V+ I+ + +PD GE +DF + + +E+
Sbjct: 825 VFLRYDNLKIYYP-NSVLATKPIMNYYRSPDMGEGIDFSVHVATPVEK 871
>07_01_0547 +
4052618-4052659,4055575-4055741,4055839-4056556,
4056678-4057114,4057241-4057315,4057490-4057673,
4057759-4057854,4057952-4058018,4058556-4058715,
4058808-4059199,4059254-4059300
Length = 794
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 657 GSETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFE 526
GS LP P Q D S D T P G+R L+ + RKL F+
Sbjct: 128 GSNDLP--QPGQFDSGSPDHNTTPCHGVRSDLKQGKCRKLQAFQ 169
>12_02_1034 -
25562214-25562280,25562661-25562794,25562990-25563109,
25563331-25563510,25563847-25564020,25564466-25564639,
25564734-25564827,25566088-25566242
Length = 365
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 282 DVAISLEGFQTEITGIFNDPVLSEFVSRFLGNLVPELLEVF 160
DVA +L+ +TE+ G + D L + + F+ N++ ++V+
Sbjct: 187 DVAKNLDSLKTELAGKYGDAELGQSIFTFVVNVIESAIKVW 227
>02_02_0492 - 10907529-10907629,10907714-10907953,10908035-10908098,
10908416-10908721,10909347-10909561,10909656-10909950,
10910493-10910597,10911112-10911180,10911433-10911519,
10911953-10913704,10914964-10915054,10915217-10915488
Length = 1198
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -2
Query: 460 RSTSHCVGRW*IRSQRDC-FGLHNIRQW*SENPRDPSSYQG---DSVDPLE 320
R C+G+ I C GLH++R S P+DP ++G +++DPLE
Sbjct: 1005 RIVDPCIGQVLIDGLDICTIGLHDLRTRLSIIPQDPVMFEGTLRNNIDPLE 1055
>06_01_0549 +
3907305-3907553,3907894-3908051,3908293-3908587,
3909088-3909339
Length = 317
Score = 29.1 bits (62), Expect = 4.8
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = -3
Query: 651 ETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINSLTFDIISVLRGLFGL 472
E +PV+D +L + +D L LR LED + + S+ ++I+V RG + L
Sbjct: 47 EPIPVVDLSRLSASNGEDSAGELAKLRSALEDWGL------FLGSILSEMINVTRGFYKL 100
Query: 471 SIDGEVPVIALDAGKYDLSVTALGFTIYGNGEAKIR-VIRPRIKATLLIHLNIREGMALN 295
++ + L GK D + G + + + + I + A L L +REG ++
Sbjct: 101 PLEEKQKYSNLVNGK-DFRIEGYGNDMVVSEKQILNWEITSLVLARLARLLGLREGYFVD 159
Query: 294 LQEAD 280
+ + D
Sbjct: 160 MFDED 164
>06_01_0536 +
3857426-3857674,3858015-3858172,3858414-3858708,
3859209-3859460
Length = 317
Score = 29.1 bits (62), Expect = 4.8
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = -3
Query: 651 ETLPVLDPFQLDRLSVDDQTIPLPGLRMTLEDLEVRKLSTFEINSLTFDIISVLRGLFGL 472
E +PV+D +L + +D L LR LED + + S+ ++I+V RG + L
Sbjct: 47 EPIPVVDLSRLSASNGEDSAGELAKLRSALEDWGL------FLGSILSEMINVTRGFYKL 100
Query: 471 SIDGEVPVIALDAGKYDLSVTALGFTIYGNGEAKIR-VIRPRIKATLLIHLNIREGMALN 295
++ + L GK D + G + + + + I + A L L +REG ++
Sbjct: 101 PLEEKQKYSNLVNGK-DFRIEGYGNDMVVSEKQILNWEITSLVLARLARLLGLREGYFVD 159
Query: 294 LQEAD 280
+ + D
Sbjct: 160 MFDED 164
>01_06_0716 - 31425189-31426460
Length = 423
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 663 ITGSETLPVLDPFQLDRLSVDDQTIP--LPGLRMTLEDLEVRKLSTFEINSLTFDIISVL 490
+ G+ + D L + + + +I +P TL +LEV L + +N +S +
Sbjct: 236 LNGNIPTSIGDLISLTTIDLSNNSISGRIPDTVSTLPELEVLNLGSNRLNGSIPQFLSEM 295
Query: 489 RGLFGLSIDG 460
RGL L+++G
Sbjct: 296 RGLKELNLEG 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,805,250
Number of Sequences: 37544
Number of extensions: 420900
Number of successful extensions: 1221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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