Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e10r
(863 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 36 0.25
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 35 0.44
BC041691-1|AAH41691.1| 403|Homo sapiens F-box protein 22 protein. 31 5.4
BC032540-1|AAH32540.1| 403|Homo sapiens F-box protein 22 protein. 31 5.4
BC020204-1|AAH20204.2| 403|Homo sapiens Unknown (protein for MG... 31 5.4
AY005144-1|AAF89095.1| 403|Homo sapiens F-box protein FBX22p44 ... 31 5.4
AK223500-1|BAD97220.1| 403|Homo sapiens F-box only protein 22 i... 31 5.4
AK024048-1|BAB14798.1| 276|Homo sapiens protein ( Homo sapiens ... 31 5.4
AF174602-1|AAF04523.1| 81|Homo sapiens F-box protein Fbx22 pro... 31 5.4
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 35.5 bits (78), Expect = 0.25
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Frame = +2
Query: 416 LRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV 595
L S +P+S++ + +SPS S S+ S+ S+ S +S SS SP S
Sbjct: 51 LSSSIPSSSS-SSSSPSSSHSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSSPSSSNS 109
Query: 596 *SSTERRSN*NGSKTGNVSDPVIMVCLKRSSIERISAS--KSRLSPSSGFSKNWIIALAP 769
SS+ S+ + S + + S P SS S+S S SPSS S + + +P
Sbjct: 110 -SSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSP 168
Query: 770 TTSFLGYAAASPRAATN 820
++S + +SP ++ +
Sbjct: 169 SSSSPSSSGSSPSSSNS 185
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 34.7 bits (76), Expect = 0.44
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Frame = +2
Query: 416 LRSYLPASNAMTGTSPSIERPKSPRSTEIISNVKELISNVLSFLTSKSSRVIRSPGSGIV 595
L S +P+S++ + + S SP S+ S+ S+ S +S SS SP S
Sbjct: 51 LSSSIPSSSSSSSSPSSSHSSSSPSSSHSSSSPSS--SSSTSSPSSSSSSSSSSPSSSNS 108
Query: 596 *SSTERRSN*NGSKTGNVSDPVIMVCLKRSSIERISAS--KSRLSPSSGFSKNWIIALAP 769
SS+ S+ + S + + S P SS S+S S SPSS S + + +P
Sbjct: 109 -SSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSP 167
Query: 770 TTSFLGYAAASPRAATN 820
++S + +SP ++ +
Sbjct: 168 SSSSPSSSGSSPSSSNS 184
>BC041691-1|AAH41691.1| 403|Homo sapiens F-box protein 22 protein.
Length = 403
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 17 PRSTFVLSNLAEVVERVLTFLPAKA 41
>BC032540-1|AAH32540.1| 403|Homo sapiens F-box protein 22 protein.
Length = 403
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 17 PRSTFVLSNLAEVVERVLTFLPAKA 41
>BC020204-1|AAH20204.2| 403|Homo sapiens Unknown (protein for
MGC:31799) protein.
Length = 403
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 17 PRSTFVLSNLAEVVERVLTFLPAKA 41
>AY005144-1|AAF89095.1| 403|Homo sapiens F-box protein FBX22p44
protein.
Length = 403
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 17 PRSTFVLSNLAEVVERVLTFLPAKA 41
>AK223500-1|BAD97220.1| 403|Homo sapiens F-box only protein 22
isoform a variant protein.
Length = 403
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 17 PRSTFVLSNLAEVVERVLTFLPAKA 41
>AK024048-1|BAB14798.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ13986 fis, clone Y79AA1001923, weakly similar to
Homo sapiens F-box protein Fbx22 (FBX22) gene. ).
Length = 276
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 17 PRSTFVLSNLAEVVERVLTFLPAKA 41
>AF174602-1|AAF04523.1| 81|Homo sapiens F-box protein Fbx22
protein.
Length = 81
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 485 PRSTEIISNVKELISNVLSFLTSKS 559
PRST ++SN+ E++ VL+FL +K+
Sbjct: 16 PRSTFVLSNLAEVVERVLTFLPAKA 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,461,427
Number of Sequences: 237096
Number of extensions: 2247729
Number of successful extensions: 5089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5086
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -