Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e06r
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...   131   1e-31
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    29   1.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   2.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   3.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   6.0  
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe...    26   8.0  

>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score =  131 bits (316), Expect = 1e-31
 Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 4/131 (3%)
 Frame = -1

Query: 814 LKNERGYTYEDEMVCSKECLPN-YEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQ 638
           L  E G+   DE+V S++ L + Y+  +K F+ EHLH DEEIR ILDG+GYFDVR  +D+
Sbjct: 48  LMKEYGFKNRDEVVVSRKGLGDRYDNMVKKFFEEHLHEDEEIRLILDGNGYFDVRSVDDR 107

Query: 637 WIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNR---PADEMPCRKD 467
           W+RI V KGD++++P GIYHRFT  T++YI A R F   P W+  +R    ++E+  RK 
Sbjct: 108 WVRIFVEKGDLIILPPGIYHRFTTTTDDYIHAMRLFHENPKWIALSRTDSTSEELDARKS 167

Query: 466 YVEKLQNGFSV 434
           Y+  ++    V
Sbjct: 168 YLNSIKKSVYV 178


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 70   YLNTYNFILFTLYNI-KQKTHYDNEYVYLKNI*TVIYIYKNELLFVSLAKTRER 228
            Y N +N + F +++  KQ+ HY + Y     +    Y+YK +LL V    T ER
Sbjct: 907  YDNGFNGLFFMVFDSQKQRVHYGDMYTSSHTLEKGEYLYKFQLLSVD-PSTLER 959


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -2

Query: 261  NSRPKLAKSVQPFSSFSETNEQQFIFIYIDY 169
            N+ P+L +S++P+ S  + + Q+FIF  +++
Sbjct: 917  NAFPQLVRSLKPYISVLKQDHQEFIFAGLNF 947


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -2

Query: 612 ETCWSSRAVSTTGLPWTPITT*KRNVSSLVSRFG--CLTTGRPMRCLAGRTTLRNYRMDS 439
           +TC     + + G   T IT    + S+ VS      L+T  P+   +G+ T  N    S
Sbjct: 42  DTCLRYTTIYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTS 101

Query: 438 QWPHNVTKLSFF 403
              HN   ++FF
Sbjct: 102 SQRHNTKTITFF 113


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 228 AGPIWLILVLNYLWESRE 281
           +GPIW +   N  WESRE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -2

Query: 300 FIYLLNLLWTPTNNSRPKLAKSVQPFSSFSETNE-QQFIFIYIDYRLYIFQINVFVII 130
           F YLLN + T  +N   ++A  +Q +    +TN+    I I++D R Y+ +I + +++
Sbjct: 167 FAYLLNTIRTRHDNVAVEIALDIQEYR--RKTNQIDNSIQIFLD-RFYMSRIGIRMLL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,767,608
Number of Sequences: 5004
Number of extensions: 86442
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)