Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e06r
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.68 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   8.4  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 324 YLIPSIFIFIYLLNLLWTPTNNSRPKLAKSV 232
           Y+IP++ + +  L +LW  + ++   +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 310  HLHIYLPFKPSLD 272
            +LH+Y P K SLD
Sbjct: 998  NLHVYAPLKISLD 1010


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 324 YLIPSIFIFIYLLNLLWTPTNNSR 253
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 73  LNTYNFILFTLYNIKQKTHYDN 138
           L+ Y  I  T  N   +THYD+
Sbjct: 29  LSKYQLITSTTLNWLPRTHYDH 50


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 324 YLIPSIFIFIYLLNLLWTPTNNSR 253
           Y+IP IFI ++   LL +  N+ +
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNHEK 252


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 115 KQKTHYDNEYVYLKNI*TVIYIYKNEL 195
           K+ +HY+++ V++KN    +  Y  EL
Sbjct: 276 KEFSHYEHQNVFVKNSGQWLREYDREL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,807
Number of Sequences: 438
Number of extensions: 6095
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)