Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e06f
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...   131   1e-31
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   1.0  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   4.1  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    26   5.4  

>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score =  131 bits (317), Expect = 1e-31
 Identities = 66/162 (40%), Positives = 102/162 (62%), Gaps = 5/162 (3%)
 Frame = +1

Query: 145 ISLDDL-FSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYEDEMVCSKECLPN-YEEKIK 318
           +S +DL  +K    +   ++ T+  DG+++    E G+   DE+V S++ L + Y+  +K
Sbjct: 22  VSAEDLEAAKVSYRHHDGDLHTF-ADGLMK----EYGFKNRDEVVVSRKGLGDRYDNMVK 76

Query: 319 SFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKGDMLVIPSGIYHRFTLDTNNY 498
            F+ EHLH DEEIR ILDG+GYFDVR  +D+W+RI V KGD++++P GIYHRFT  T++Y
Sbjct: 77  KFFEEHLHEDEEIRLILDGNGYFDVRSVDDRWVRIFVEKGDLIILPPGIYHRFTTTTDDY 136

Query: 499 IKAKRFFIGEPVWLPYNR---PADEMPCRKDYVEKLQNGFSV 615
           I A R F   P W+  +R    ++E+  RK Y+  ++    V
Sbjct: 137 IHAMRLFHENPKWIALSRTDSTSEELDARKSYLNSIKKSVYV 178


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 32/102 (31%), Positives = 47/102 (46%)
 Frame = -3

Query: 458 LGMTSMSPLDTAIRIH*SSPSLTSK*PEPSRINLISSSVCKCSV*NDFIFSS*FGRHSLE 279
           L  ++ SP  T++ I  SS S T      S  + ISSS+   S     I SS     S  
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSST----ILSSPTPSTS-S 634

Query: 278 QTISSSYV*PRSFLSFSSTPSVLYVSMFILKYSTPVLENKSS 153
             ISSS +   S    SS+ S + +S  +  YS+ V+ + S+
Sbjct: 635 LMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSST 676


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 437 ETCWSSRAVSTTGLPWTPITT*KRNVSSLVSRFG--CLTTGRPMRCLAGRTTLRNYRMDS 610
           +TC     + + G   T IT    + S+ VS      L+T  P+   +G+ T  N    S
Sbjct: 42  DTCLRYTTIYSQGEYETTITIPPNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTS 101

Query: 611 QWPHNVTKLSFF 646
              HN   ++FF
Sbjct: 102 SQRHNTKTITFF 113


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = +1

Query: 118 QHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYEDEMVCSKECLP 297
           Q HK   E + L  + S T +E  K   +  K + VLE  K ++  T E ++      L 
Sbjct: 510 QEHKKEVEALQLQLVNSSTELESVKSENEKLKNELVLEIEKRKKYETNEAKITTVATDLS 569

Query: 298 NYEEKIKSF 324
            Y  + K +
Sbjct: 570 QYYRESKEY 578


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 248 RSFLSFSSTPSVLYVSMFILKYSTPVLENKSSREI 144
           R+    + T S L +S  I + S+P LENKS + +
Sbjct: 11  RTMTEKARTVSDLTISQAIFELSSPFLENKSQKAL 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,655,840
Number of Sequences: 5004
Number of extensions: 85895
Number of successful extensions: 218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)