Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17e06f
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68116-3|CAA92175.1| 178|Caenorhabditis elegans Hypothetical pr... 129 3e-30
U80455-6|AAB37884.1| 159|Caenorhabditis elegans Hypothetical pr... 118 6e-27
U23173-1|AAC46708.1| 221|Caenorhabditis elegans Hypothetical pr... 112 3e-25
U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical pr... 33 0.24
AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical ... 28 6.8
Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical... 28 8.9
>Z68116-3|CAA92175.1| 178|Caenorhabditis elegans Hypothetical
protein F42F12.4 protein.
Length = 178
Score = 129 bits (311), Expect = 3e-30
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
Frame = +1
Query: 79 AWYMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYT 258
A++M T + R + P + ++ + GVE K+N D L++L +
Sbjct: 2 AYFMTDVTKENRQDECRFSPNKEATEEDLLRIGVECTKVNFDDEHVQEDLDRLIKKYDMN 61
Query: 259 YEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIAVSKG 438
+ DE+ + +PN++EK+ F+ EHLH D E+R I G G+FDVR ++ WIRI V +G
Sbjct: 62 FHDEVHICRATMPNFDEKLDIFFEEHLHDDAELRVIKHGVGFFDVRTKDEAWIRIPVRRG 121
Query: 439 DMLVIPSGIYHRFTLDTNNYIKAKRFFIGEPVWLPYNRPA--DEMPCRKDYVEKL 597
D + +P+GIYHRFT D + + A R F P W +NR A DE R+ Y+ +
Sbjct: 122 DFVFLPAGIYHRFTTDPSEDVVALRLFRNNPKWTAFNRKADGDEQRVRQQYLNDI 176
>U80455-6|AAB37884.1| 159|Caenorhabditis elegans Hypothetical
protein T01D1.4 protein.
Length = 159
Score = 118 bits (283), Expect = 6e-27
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Frame = +1
Query: 73 VQAWYMDS-ETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINID-TYKTDGVLEKLKNE 246
+Q W+M+ D+RL HH PP+ I+ L GV+Y+K+++D T L +K E
Sbjct: 1 MQIWHMEPFPCGDRRLPHHVFPPKKITTTQLGQLAGVQYYKVDLDDTASMKKRLSAVKTE 60
Query: 247 RGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQWIRIA 426
+ T+ D S+ L +++K++ FY + ++ I +++G+ Y+DV +D WIR+
Sbjct: 61 KNVTFTDMFTVSETML-EFDDKMEQFYEPQVQKEDVISLVVEGTCYYDVEPEDDSWIRVQ 119
Query: 427 VSKGDMLVIPSGIYHRFTLDTNNYIKAKRFF 519
V KGD++VIP G+ HRFT N++K +RFF
Sbjct: 120 VEKGDLIVIPKGLSHRFTTTPQNFVKIQRFF 150
>U23173-1|AAC46708.1| 221|Caenorhabditis elegans Hypothetical
protein K07E1.1 protein.
Length = 221
Score = 112 bits (269), Expect = 3e-25
Identities = 57/159 (35%), Positives = 87/159 (54%), Gaps = 2/159 (1%)
Frame = +1
Query: 58 FVFKMVQAWYMDSETT-DQRLQHHKNPPEYISLDDLFSKTGVEYFKIN-IDTYKTDGVLE 231
F KMVQ W M+ D RL HH PP+ I+ D+L +TG Y+K++ +D L
Sbjct: 60 FQLKMVQIWQMEPYPCGDPRLPHHLFPPKKITPDELSKRTGTLYWKLDTLDQVALAKRLT 119
Query: 232 KLKNERGYTYEDEMVCSKECLPNYEEKIKSFYTEHLHTDEEIRFILDGSGYFDVRDGEDQ 411
LK E + ED E N+++KI+ + E E+ R I++G+ Y+DV D Q
Sbjct: 120 TLKLEHSFKKEDIFTLDAETTANFDDKIEELFEESSVPFEQARMIIEGTAYYDVEDKNGQ 179
Query: 412 WIRIAVSKGDMLVIPSGIYHRFTLDTNNYIKAKRFFIGE 528
W+RI GD+++IP+ RFT +N++K +RF+ E
Sbjct: 180 WVRIFCEYGDLILIPANTCFRFTTTPHNFVKMRRFYKDE 218
>U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical
protein C15B12.2 protein.
Length = 269
Score = 33.1 bits (72), Expect = 0.24
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 150 GNIFWRIFMVLQPLVRCFTIHVPCLYHFKNKNN 52
G++FW I + LV + +PCLYH+ ++N
Sbjct: 59 GHMFWYILTFITYLVWTLLLWIPCLYHYTCRHN 91
>AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical
protein Y32B12B.5 protein.
Length = 451
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Frame = +1
Query: 22 KLFTYVHI*IIIFVFKMVQAWYMDSETTDQRLQHHKNPPEYISLDD-LFSKTGVEYFKIN 198
+L TY H+ VF ++ AW E Q + H K+P + +D L + G+ F
Sbjct: 159 QLGTYRHLMCAFAVFSLIYAWI---EVFTQPVMHTKDPVFIVFMDSPLKYQAGIGNFVTC 215
Query: 199 IDTYKTDGVLEKLKNERGYTYEDEMVCSKECLPNYE 306
+ V+ L + ++Y VC E LP +
Sbjct: 216 LYCGSFALVISLLAAQ--FSYRFIAVCRPEILPKLD 249
>Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical
protein T07C12.6 protein.
Length = 360
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 267 IFICVTSFILKFF*YSISFICVYVYFKI 184
I + +T I FF + I+ +C+ VY KI
Sbjct: 30 IIVSITELIFYFFAFYINSVCLKVYLKI 57
>AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical
protein F41G4.8 protein.
Length = 242
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/88 (22%), Positives = 39/88 (44%)
Frame = +1
Query: 85 YMDSETTDQRLQHHKNPPEYISLDDLFSKTGVEYFKINIDTYKTDGVLEKLKNERGYTYE 264
Y+ S + Q + E +D+ + + +E + I Y T + N + + E
Sbjct: 7 YLLSAAVSCQFQDFEGSGEEALIDEYWLQRLIE--NVGIPHYLTQKAYQLTANAKEHVDE 64
Query: 265 DEMVCSKECLPNYEEKIKSFYTEHLHTD 348
DE++ +P+Y ++ F T+ L TD
Sbjct: 65 DEILTLDASVPDYARQV--FTTQVLSTD 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,947,271
Number of Sequences: 27780
Number of extensions: 471520
Number of successful extensions: 1221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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