Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e04r
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    29   0.69 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   1.2  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.6  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   6.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    26   6.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   8.5  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 33/135 (24%), Positives = 59/135 (43%)
 Frame = -1

Query: 759 VVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 580
           V+I HG  G+     +   K  F    D ++  +D      S    A ++ + +      
Sbjct: 23  VLIFHGLLGSKRNWRSLAKK--FSCKLDRDIYAIDQRCHGDSP-CVAPLSYSAMALDAFQ 79

Query: 579 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDA 400
           F+K+ KL  +K  I+G ++GA  A VT      KV ++  +D S   W  ++ R     A
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNS--PWYQDLPR--DYGA 133

Query: 399 QYVEVIHTDGSGVNK 355
            + ++I  D + + K
Sbjct: 134 YFRKMIQIDEANITK 148


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -1

Query: 831 LHSPKTTFPTGNDTAAPFNNNSDIVVI-IHGHSGTATTTINPIVKDAFLTSG-DYNVIVV 658
           L +P TT PT N + +   ++S I+   I   S TAT+T  P +  +   S   Y   ++
Sbjct: 537 LSTPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSSLI 596

Query: 657 DWSSFSLSTYSTAVMAVTGVGSSIAT 580
             SS   S  S+ +   + V S I++
Sbjct: 597 PSSSTDYS--SSLITVCSNVTSEISS 620


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 892  LERFGSLNKYYYYSNAQRNSITLTEDHFSHWKRYCCAL*Q*FGYCRN--NTRSQWHCYDD 719
            L R GSLN    +S+A  +   L +++ S + ++       F Y  +  +T ++W  YD 
Sbjct: 839  LLRVGSLNNPIVFSSANYSYDLLQKENNSVYIKHAAIGADMFRYSLDFGSTWTEWQTYDG 898

Query: 718  DQPYC 704
            +  YC
Sbjct: 899  NNTYC 903


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 316 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 417
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 401 ASFVPSRSTLFSQSRAEGSRPVILATLPSK 490
           + F      +FS    EGSRPV LA L S+
Sbjct: 461 SGFSVREEAVFSSPTTEGSRPVSLARLKSE 490


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/78 (24%), Positives = 40/78 (51%)
 Frame = -1

Query: 822 PKTTFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSF 643
           P+T F + + +A P    S I   +   S   ++  +PI  ++  +S   ++I    SS 
Sbjct: 775 PQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISSNSVTSS--TSII----SSI 828

Query: 642 SLSTYSTAVMAVTGVGSS 589
           + S+Y T++ +++ + SS
Sbjct: 829 ASSSY-TSIPSISSIASS 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,836,820
Number of Sequences: 5004
Number of extensions: 82637
Number of successful extensions: 237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)