Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e02f
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    26   0.37 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   1.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   1.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.5  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 507 RSCNNYWRCQ 536
           +SCN YW+CQ
Sbjct: 168 KSCNRYWQCQ 177


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 504 HRSCNNYWRC 533
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 504 HRSCNNYWRC 533
           H SC+ YW+C
Sbjct: 35  HTSCDKYWKC 44


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 619 TDYAAEVSRGSGVRRPTRHQQITVNYSNDTCESKINY 729
           T   A +SRG     P   QQ   N ++   E+ IN+
Sbjct: 338 TQGVARMSRGRQYNYPNPQQQYYYNKNHPNSENYINH 374


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 619 TDYAAEVSRGSGVRRPTRHQQITVNYSNDTCESKINY 729
           T   A +SRG     P   QQ   N ++   E+ IN+
Sbjct: 286 TQGVARMSRGRQYNYPNPQQQYYYNKNHPNSENYINH 322


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 443 SRASPPEAKDLRTRLKMRISPSAEPTD 363
           S  S  E KD+ T L    SP+ +P D
Sbjct: 116 SPKSEKEEKDMETTLTPCASPNRKPDD 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,636
Number of Sequences: 336
Number of extensions: 2968
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)