Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e01r
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    27   4.6  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.0  

>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -2

Query: 260 LVQSWS*VGSVHGTQVNELLQHHINLNMYTTSFVIIINYLQVRAGLKRGCR 108
           +VQ +S +G +    +NE   +  N++ Y ++F I+   LQ R   +R  R
Sbjct: 229 IVQKFSAIGGLIKKALNEFSLYKTNISFYLSNF-IVNGVLQYRKEFQRWLR 278


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 376 MKRRHSTRCSDKLLCLDVFSILKFSVEMKLSFV 278
           +K+  + +CS K +   +FS+L FS E+ LSFV
Sbjct: 262 IKKDSNVKCSKKQI---LFSLLYFSSEVYLSFV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,948
Number of Sequences: 5004
Number of extensions: 37169
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)