Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e01f
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1ZDB5 Cluster: Putative uncharacterized protein; n=1; ...    36   0.68 
UniRef50_O78940 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q8IBJ6 Cluster: Putative uncharacterized protein MAL7P1...    33   4.8  
UniRef50_Q5C1A4 Cluster: SJCHGC07287 protein; n=1; Schistosoma j...    33   6.3  
UniRef50_A3GEY0 Cluster: RNA helicase-related protein required f...    33   6.3  

>UniRef50_Q1ZDB5 Cluster: Putative uncharacterized protein; n=1;
           Psychromonas sp. CNPT3|Rep: Putative uncharacterized
           protein - Psychromonas sp. CNPT3
          Length = 170

 Score = 36.3 bits (80), Expect = 0.68
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 390 FTILHTGSNASLCSRCTSVPSLSISSDTM*SAAILFSALTKSIGKLLNF--HMFNYLNLS 217
           + + HTG+N        S+P  SI    +    ++FSA  K    L  F  + FNYLN S
Sbjct: 39  YNVRHTGTNKYTNGNMYSIPVSSIKFSDLKEVIVIFSANGKLEAVLTTFPKNKFNYLNSS 98

Query: 216 INK 208
           I K
Sbjct: 99  IGK 101


>UniRef50_O78940 Cluster: Putative uncharacterized protein; n=1;
           Agrocybe aegerita|Rep: Putative uncharacterized protein
           - Agrocybe aegerita (Black poplar mushroom)
          Length = 173

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
 Frame = -2

Query: 264 IGKLLNFHMFNYLNLSINKAV*KGTFTHTL---------TRYFLVILWTLLRMSFYFILL 112
           + KLLN     YL+L I  +V K  F+  L           +F    + + R+  Y IL+
Sbjct: 10  LSKLLNIFRKYYLDLEIVFSVIKLGFSDALYLSLLDKPKKDFFYNTYFIIYRLIGYIILI 69

Query: 111 RIYVIFYFDFIYLDNLIR 58
             Y+ F  +FIYLDNL++
Sbjct: 70  SFYMGFKTNFIYLDNLLK 87


>UniRef50_Q8IBJ6 Cluster: Putative uncharacterized protein
           MAL7P1.142; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL7P1.142 - Plasmodium
           falciparum (isolate 3D7)
          Length = 418

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = -2

Query: 300 SAAILFSALTKSI----GKLLNFHMFNYLNLSINKAV*KGTFTHTLTRYFLVILW---TL 142
           S+ ILF +LT S        L+F +F+ L LS           H ++ ++   L+   +L
Sbjct: 228 SSFILFHSLTLSFILFHSLTLSFILFHSLTLSFILFHSFTFIIHIISFFYFYRLFYFISL 287

Query: 141 LRMSFYFILLRIYVIFYFDFIYLDNLI 61
           L  SFYFILLR   I +  F ++ ++I
Sbjct: 288 LPRSFYFILLRSSFILFHSFTFIIHII 314


>UniRef50_Q5C1A4 Cluster: SJCHGC07287 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07287 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 195

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 150 WTLLRMSFYFILLRIYVIFYFDFIYLDNL 64
           W+LLR S  F+LL +++  YFD+ YL  L
Sbjct: 121 WSLLRTSV-FLLLALHIFSYFDYFYLPGL 148


>UniRef50_A3GEY0 Cluster: RNA helicase-related protein required for
            pre-mRNA splicing; n=5; Saccharomycetaceae|Rep: RNA
            helicase-related protein required for pre-mRNA splicing -
            Pichia stipitis (Yeast)
          Length = 2111

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 28/84 (33%), Positives = 39/84 (46%)
 Frame = +2

Query: 248  FSNLPILLVSAENKIAADYIVSELIDNEGTDVHREQSDALDPVWRIVNKYYRADVRVHTR 427
            F+N  IL   A  K+   Y +  L D+E  DV R + D L+ V   VNKY   D+     
Sbjct: 1945 FTN-DILKRCATYKVETVYDIMSLEDDERDDVLRLEGDKLNRVAEFVNKYPNIDMTYELD 2003

Query: 428  LDGEPLHVDPHLIEGHLIYLTQDE 499
            +    +  +P LI    I L +DE
Sbjct: 2004 VSEPIVANEPKLI---TIKLERDE 2024


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,681,474
Number of Sequences: 1657284
Number of extensions: 9350908
Number of successful extensions: 25441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25392
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)