Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17e01f
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    23   6.0  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   7.6  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   7.6  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.0 bits (47), Expect(2) = 6.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +2

Query: 305 IVSELIDN---EGTD---VHREQSDALDPVWRIVNK 394
           I+ EL++N    G D   VH+E    L+ +W+ +N+
Sbjct: 221 ILKELLNNTKDNGIDQQIVHKEHISHLEKIWKNINE 256



 Score = 21.0 bits (42), Expect(2) = 6.0
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 236 NMWKFSNLPILLVSAENKIAADYIVSELIDNE 331
           +++K ++L  L +  +NKI  D+   + +DN+
Sbjct: 177 SLYKQTDLTSLCMFNQNKIQTDWSSIDPMDND 208


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -2

Query: 189 FTH--TLTRYFLVILWTLLRMSFYFILLR 109
           F+H  +LTR  ++I W +    F FILLR
Sbjct: 219 FSHRNSLTRIKIIIWWIICLGCFIFILLR 247


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -2

Query: 453 STCSGSPSSRV*TRTSAL*YLFTILHTGSNASLCSRCTSVPSLSISSDTM*SAAILFSAL 274
           S+ S S +S   + TS+   + +   T S+ S  S  TS+PS+S +  +  S +  F++L
Sbjct: 111 SSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTS-SFTSL 169

Query: 273 TKS 265
           + S
Sbjct: 170 SSS 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,683
Number of Sequences: 5004
Number of extensions: 40033
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)