Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d22r
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   3.6  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   4.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.3  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +3

Query: 183 WRYKNNLLFQLHFCNSDAGW----STKKNLYSHHYY*LTFVSLCYKTFFLSYYSTSQRS* 350
           WR  +  LF + FC   A +    STK  ++   Y  LTF+ + + TF  S  +    S 
Sbjct: 402 WRPFSFWLFSI-FCTIAAYYLVSSSTKITVFIFLYLMLTFIGIIFSTFMTSEDAELVLSY 460

Query: 351 NI-SSFVQYSRSA*LTFSLDFFIYPLVLAL 437
           ++ S  +  S  + L FSL F +  L++ L
Sbjct: 461 DLMSKSLFISVVSTLNFSLSFVVAILLVPL 490


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 575 LLGLFLSIFYKKNNIFLNMTYSRLNFGLKYKYFLIC 468
           LLG+    F+   +++++MTY R   G +  Y  +C
Sbjct: 141 LLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVC 176


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 742  RILNLAKGVILKMDKNLILIFDFFTYNIIKIIYFQQIL 629
            RILN     + K+D+ + L F FF  N I++++   ++
Sbjct: 1002 RILNRFSNDVYKVDEVVSLTFMFFFRNSIQVLFILGVI 1039


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,264
Number of Sequences: 5004
Number of extensions: 60192
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)