Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d22r
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41108-3|AAK39157.2|  443|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    29   5.9  

>U41108-3|AAK39157.2|  443|Caenorhabditis elegans Hypothetical
           protein C08D8.1 protein.
          Length = 443

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -1

Query: 733 NLAKGVILKMDKNLILIFDFFTYNIIKIIYFQQILSSKIS 614
           +L++ V +  D+NL+L+F  F Y  +++ +F  +  + +S
Sbjct: 211 HLSEIVKISFDRNLMLLFFMFLYTGLELSFFSAVFPTMVS 250


>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 572 LGLFLSIFYKKNNIFLNMTYSRLNFGLKYKYFLICYKSY 456
           LG F++       I+L +T +R NFG  YKY ++ + ++
Sbjct: 13  LGFFVAFITNVTLIYLIITRTRQNFG-SYKYLMLWFAAF 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,128
Number of Sequences: 27780
Number of extensions: 322190
Number of successful extensions: 555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)