Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d22f
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   5.2  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    26   6.9  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   6.9  

>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 419 LLEHVCQQLNLTESDYFGLRYVDASGQRH 505
           L++ +C+  N TE+  F +  VD   QRH
Sbjct: 185 LIKELCESANSTENVCFSVSTVDEIQQRH 213


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 578 KFYPPNPLLLKEDV 619
           K Y PNPLL KE+V
Sbjct: 31  KLYTPNPLLTKEEV 44


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 407  KGKSLLEHVCQQLNLTESDYFGLRYVDASGQRHWLHMAKLILKQVK 544
            K K+ +++   Q+N  ES +      D       LH  K++LKQ++
Sbjct: 996  KDKTKMQNKLTQINFDESCFLDPAIDDKDPWNEMLHEKKVLLKQLQ 1041


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,488
Number of Sequences: 5004
Number of extensions: 54577
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)