Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d22f
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0288 + 16416409-16416603,16417584-16417635,16417842-164178...    36   0.036
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756...    32   0.58 
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116...    28   9.5  

>09_04_0288 +
           16416409-16416603,16417584-16417635,16417842-16417890,
           16418354-16418497,16418730-16418783,16418883-16418948,
           16419174-16419252,16419390-16419467
          Length = 238

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +2

Query: 8   YLH*FCVSLLVSINIVRYLGIVYG*KLNLTIGGITDYLLIWDFYSP 145
           YLH FCVSLL  +      G++    LN T+  +T +LL+W  +SP
Sbjct: 108 YLHCFCVSLLERLKRYGAAGVLSYGLLN-TVYYVTTFLLVWFIFSP 152


>04_04_1509 -
           34074206-34074398,34074506-34074777,34075411-34075608,
           34076092-34076187,34076318-34076500,34076597-34076799,
           34076887-34077013,34077098-34077292,34077400-34077540,
           34077669-34077812,34077876-34078040,34078776-34078976,
           34079049-34079195,34079275-34079427,34079731-34079833,
           34079954-34080069,34080168-34080349,34080442-34080541,
           34081200-34081527,34081605-34081834,34081979-34082110,
           34082787-34082859,34083274-34083338
          Length = 1248

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 635 YLQLKRDLLHGRLYCTANEAAMLGALIIQIELGDYDSPIHIGNYVS 772
           Y+QL+ D + G      ++AA L AL I +E+G  D+P     ++S
Sbjct: 368 YVQLQHDYILGNYPVGRDDAAQLSALQILVEIGFVDNPESCVEWIS 413


>08_02_0444 -
           17209447-17209491,17210559-17210849,17211655-17211672,
           17211798-17211969,17212523-17212630,17212940-17213382
          Length = 358

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 477 DMWTQVDRDTGYTWLNSSSNKSKMLRLYCSVFE 575
           +MW++    T     N S   SK L+LYC  FE
Sbjct: 158 EMWSETKDVTLTRKTNCSCKYSKCLKLYCECFE 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,261
Number of Sequences: 37544
Number of extensions: 303929
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)