Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d21f
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 30 0.40
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 2.2
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 27 2.9
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 3.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 5.0
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 6.6
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 6.6
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 6.6
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 25 8.7
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom... 25 8.7
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 25 8.7
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 560 YFQRTQSSVLPRLR--FHRKSPDAQRHRRRHVYVCQESFISSRQGVPLVQQRVQDEAR 727
YFQ + V P + + P AQ+ ++ HV+ ESF + G P+++ + + R
Sbjct: 39 YFQDSNEYVEPNIPAVYGSMIPVAQQLQQHHVHTPGESFADNASGYPVIKHELSELLR 96
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +3
Query: 171 WDYMTHNNPTVIADESNGDIAADSYHN 251
W +TH+ P+V+AD++ I ++ +H+
Sbjct: 244 WVDLTHSLPSVVADDAADYIPSEGFHH 270
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 653 VCQESFISSRQGVPLVQQRVQDEARGTVRYYL 748
VC ++++Q +P+ +R + E R R+YL
Sbjct: 296 VCTNWLLNNKQHLPIQCKRFRSERRANARFYL 327
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 419 NDFSVSLGLASKVAGIGRFCQS 484
N+F + GLAS AG FC++
Sbjct: 113 NNFPTAAGLASSAAGYAAFCEA 134
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +3
Query: 162 ENIWDYMTHNNPTVIADESNGDIAADSYHNV 254
++IW+ M ++NP+VI + ++ A Y +
Sbjct: 321 QSIWETMNNSNPSVIPESTSSREPAARYRKI 351
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 339 FANEVNEAGVDYYNRLINEMLKYNITPMISLYHWDLPQK 455
F NE + A + Y L++ ++ + +TP I+LY+ + +K
Sbjct: 24 FPNEYSNADIAYV--LLSTVVVFTVTPGIALYYAGMVRK 60
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 369 DYYNRLINEMLKYNITPMI 425
D ++RL++ ++KYN+T MI
Sbjct: 357 DVFSRLMSALVKYNMTEMI 375
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 476 KTSQFLQLLRQVPVIQRNHWSNIVFQHLVD*PVVVVDSCFVD 351
KT+ LQ L Q P+ N WSN + L+ ++ F D
Sbjct: 48 KTNSLLQTLFQTPLPNANIWSNQAIRILMAFNILANGGWFFD 89
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 162 PLFHLHPKLLRSGMRLWLSQTKSHLEISSAA*STVQSNTPPTTLT 28
P F LH LL G++L LS K ISS + + P+T T
Sbjct: 3 PRFLLHGALLALGIQLCLSIGKITGHISSIEATAADIHDAPSTTT 47
>SPCC330.10 |pcm1||mRNA capping
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +2
Query: 485 TDSRLV*RLRTRGFRQIG*QSQALDYFQRTQSSVLPRLRFHRKSPDAQRHRRRHVYVCQE 664
T++R R + R I Q + DYFQ +S H + +AQ R H +
Sbjct: 44 TENRRYARPTAQMNRVIEQQPRRRDYFQNNDNSGRRGYNRHENNGNAQDVVRSHYNARPD 103
Query: 665 SFISSRQGVPLVQ 703
RQ P++Q
Sbjct: 104 LGYKKRQFSPIIQ 116
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 108 SQTKSHLEISSAA*STVQSNTPPTTLTAGTS 16
S T ++ +SS+ STV S+TP +T+ +GTS
Sbjct: 118 SSTTDNVIVSSSISSTV-SSTPVSTIYSGTS 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,272,094
Number of Sequences: 5004
Number of extensions: 68809
Number of successful extensions: 218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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