Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d21f
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 162 3e-40
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 158 3e-39
AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GA... 29 3.5
AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion def... 29 3.5
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 4.7
AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical... 28 6.2
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 28 8.1
U88311-1|AAB42346.1| 177|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 162 bits (393), Expect = 3e-40
Identities = 90/233 (38%), Positives = 131/233 (56%), Gaps = 11/233 (4%)
Frame = +3
Query: 81 RFPDDFLFGTATASYQIEGAWDEDGKGENIWDYMTHNNPTVIADESNGDIAADSYHNVER 260
+FP +F TATA+YQIEGA D +G+G + WD + P I D S+ D++ D +
Sbjct: 6 KFPKNFKLATATAAYQIEGAKDLNGRGFSTWDAI-RLEPGRILDNSDPDLSCDGLLKYKE 64
Query: 261 DVEMMRELGLDVYRFSVSWSRILPSGFANEVNEAGVDYYNRLINEMLKYNITPMISLYHW 440
DV ++ E+G+ YRFS+SWSRILP G + +NE G+ +Y L + + NI P+++L+H+
Sbjct: 65 DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124
Query: 441 DLPQKLQELG-GFANPLIADWFEDYVRVVFAKLGDRVKLWITFNEPRVVCYQGYGSTEKA 617
D+P + + G + N + FE + + F K GD VK WIT+NE + C Q +GS K
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNE--INC-QAWGSIVKV 181
Query: 618 ----------PMLNATAVGTYMCARNLLLAHAKAYRLYNNEFKTKQGGQCGIT 746
P + Y A N+LL HAK YR Y+ +K Q G GIT
Sbjct: 182 EGEFWLCPERPEIENHKQAPYFGAANMLLTHAKIYRNYDQNYKPTQHGILGIT 234
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 158 bits (384), Expect = 3e-39
Identities = 83/230 (36%), Positives = 124/230 (53%), Gaps = 8/230 (3%)
Frame = +3
Query: 81 RFPDDFLFGTATASYQIEGAWDEDGKGENIWDYMTHNNPTVIADESNGDIAADSYHNVER 260
+FP +F TATA+YQIEGA + DG+G + WD + N I D S+ D++ + +
Sbjct: 6 KFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSENGR-IHDNSDPDLSCEGRLKYKE 64
Query: 261 DVEMMRELGLDVYRFSVSWSRILPSGFANEVNEAGVDYYNRLINEMLKYNITPMISLYHW 440
DV ++ ++G+ YRFS+SWSRILP G +NE G+ +Y + + I P+++L+H+
Sbjct: 65 DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124
Query: 441 DLPQKLQELG-GFANPLIADWFEDYVRVVFAKLGDRVKLWITFNEPRVVCYQGYGSTE-- 611
D+P + + G + N + FE + + F K GD VK WITFNE + + E
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNEINMQAWSSVVKIEGE 184
Query: 612 -----KAPMLNATAVGTYMCARNLLLAHAKAYRLYNNEFKTKQGGQCGIT 746
P + Y+ A N+LL HAK YR Y +K Q G GIT
Sbjct: 185 LWLCPDRPEIENHEQAPYIAATNMLLTHAKIYRNYQKNYKETQNGLIGIT 234
>AY383563-1|AAQ96595.1| 539|Caenorhabditis elegans excitatory GABA
receptor EXP-1B protein.
Length = 539
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 575 GFVESNPELDSVTQFGENHAYVVFKPIGYQWIGKTSQFLQLLRQV 441
G + PE+ F + + VF G G+T FLQ LR++
Sbjct: 65 GQAQHRPEMTESENFAQPNTESVFSSGGVDSYGETRDFLQFLRRI 109
>AF098990-1|AAC67448.3| 539|Caenorhabditis elegans Expulsion
defective (defecation)protein 1 protein.
Length = 539
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 575 GFVESNPELDSVTQFGENHAYVVFKPIGYQWIGKTSQFLQLLRQV 441
G + PE+ F + + VF G G+T FLQ LR++
Sbjct: 65 GQAQHRPEMTESENFAQPNTESVFSSGGVDSYGETRDFLQFLRRI 109
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 153 GKGENIWDYMTHNNPTVIADESNGDIAADSYHNVERDVE 269
GK + I + TH P ++A ++A D Y +V +E
Sbjct: 923 GKPKTITGFQTHTTPVLLAHGERAELANDEYLSVTPHLE 961
>AF106583-12|AAD03133.1| 432|Caenorhabditis elegans Hypothetical
protein F23C8.11 protein.
Length = 432
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/99 (24%), Positives = 40/99 (40%)
Frame = +3
Query: 144 DEDGKGENIWDYMTHNNPTVIADESNGDIAADSYHNVERDVEMMRELGLDVYRFSVSWSR 323
+ DG E + + +ADE++ D + D HN R EM+ D R S S S+
Sbjct: 59 ESDGDDEEVHEEYVQQE---LADENHFDYSYDEGHNFNRQDEML-PASEDQKRRSSSNSK 114
Query: 324 ILPSGFANEVNEAGVDYYNRLINEMLKYNITPMISLYHW 440
+ D +N L + T +I L+++
Sbjct: 115 TPTKALPRDTTAVDFDVFNHL---QTGQSFTTIIGLFYF 150
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical protein
T01G1.3 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 548 QALDYFQRTQSSVLPRLRFHRKSPDAQRHRRRHVYVCQESFISSRQ 685
+A D R Q+ + PRL +R SP++++H Y F+S RQ
Sbjct: 1006 KAQDLRTRIQAELSPRLAANRLSPESKQHLTHMAY-----FVSMRQ 1046
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical protein
T01G1.3 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 548 QALDYFQRTQSSVLPRLRFHRKSPDAQRHRRRHVYVCQESFISSRQ 685
+A D R Q+ + PRL +R SP++++H Y F+S RQ
Sbjct: 1006 KAQDLRTRIQAELSPRLAANRLSPESKQHLTHMAY-----FVSMRQ 1046
>U88311-1|AAB42346.1| 177|Caenorhabditis elegans Hypothetical
protein C10H11.7 protein.
Length = 177
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 498 WFEDYVRVVFAKLGDRVKLWITFNEP 575
WF V F K G++V + +TFN P
Sbjct: 83 WFRSKPSVGFIKSGEKVHVRVTFNSP 108
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,041,952
Number of Sequences: 27780
Number of extensions: 380744
Number of successful extensions: 1167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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