Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d19r
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    29   3.5  
05_02_0037 + 5883285-5884292                                           29   6.2  

>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 316 SSNEVCVEYLTVGNSLALLPALLTSMSDG 230
           S NE+C+E   VG+S ++LPA L   ++G
Sbjct: 90  SLNELCLESAAVGDSNSVLPAALKLSAEG 118


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 715 CCWQMWPNVWSPRHAC 668
           CCW   P+VW PR  C
Sbjct: 304 CCWPSPPSVWWPRCGC 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,646,705
Number of Sequences: 37544
Number of extensions: 469283
Number of successful extensions: 1108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)