Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d19r
         (845 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U95006-1|AAB53638.1|   63|Homo sapiens D9 splice variant A protein.    44   7e-04
BC009571-1|AAH09571.1|   63|Homo sapiens stimulated by retinoic ...    42   0.002
U95007-1|AAB53639.1|   58|Homo sapiens D9 splice variant B protein.    30   9.2  
BC011610-1|AAH11610.1|   57|Homo sapiens STRA13 protein protein.       30   9.2  

>U95006-1|AAB53638.1|   63|Homo sapiens D9 splice variant A protein.
          Length = 63

 Score = 44.0 bits (99), Expect = 7e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -1

Query: 680 ETCLRAVKQAQREGSNKVDVEHIEKCLPQLMLDF 579
           E  +R V+QAQ E + +VDV+ +EK LPQL+LDF
Sbjct: 30  EAAVRGVRQAQAEDALRVDVDQLEKLLPQLLLDF 63


>BC009571-1|AAH09571.1|   63|Homo sapiens stimulated by retinoic
           acid 13 homolog (mouse) protein.
          Length = 63

 Score = 42.3 bits (95), Expect = 0.002
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = -1

Query: 680 ETCLRAVKQAQREGSNKVDVEHIEKCLPQLMLDF 579
           E  +R V+QAQ E + + DV+ +EK LPQL+LDF
Sbjct: 30  EAAVRGVRQAQAEDALRADVDQLEKVLPQLLLDF 63


>U95007-1|AAB53639.1|   58|Homo sapiens D9 splice variant B protein.
          Length = 58

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 680 ETCLRAVKQAQREGSNKVDVEHIEKCL 600
           E  +R V+QAQ E + +VDV+ +EK L
Sbjct: 30  EAAVRGVRQAQAEDALRVDVDQLEKLL 56


>BC011610-1|AAH11610.1|   57|Homo sapiens STRA13 protein protein.
          Length = 57

 Score = 30.3 bits (65), Expect = 9.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 680 ETCLRAVKQAQREGSNKVDVEHIEKCL 600
           E  +R V+QAQ E + +VDV+ +EK L
Sbjct: 29  EAAVRGVRQAQAEDALRVDVDQLEKLL 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,444,885
Number of Sequences: 237096
Number of extensions: 2651873
Number of successful extensions: 9199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9199
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)