Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV17d19f
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 29 0.68
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 2.7
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 26 4.8
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.8
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 4.8
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 26 4.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 6.3
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 26 6.3
SPBC1685.13 |||non classical export pathway protein |Schizosacch... 25 8.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 29.1 bits (62), Expect = 0.68
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 108 DVIKELLENHFQESKTKIA--PHALMLLADVAKCLVTETCLRAVKQA-QREGSNKVDVEH 278
DV E ++N Q++ T+ A L LL D K + E+ ++K+ +R + DVE
Sbjct: 229 DVPIESIQNALQQTGTEYANLTEKLTLLLDTIKDV--ESYAHSLKELLKRRDQKQQDVEA 286
Query: 279 IEKCLPQLMLDFP*INKDATNGMSI 353
+++ +L L+ I+ +NG S+
Sbjct: 287 LQEYSAKLSLERDKISSGGSNGFSL 311
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 157 LVLLSWKWFSNSSFITSFLIVLFTL 83
+++ ++WF+N SFIT ++ + F L
Sbjct: 52 VIVKFYRWFNNLSFITRWITIWFPL 76
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 30 MARNIKDNNNIDPATLLSNVKSTIKKDVIKELLEN-HFQESKTKI 161
++R N + + + T+ ++V KEL+EN HF E T I
Sbjct: 26 LSREYHKNGPYNHVVIRPLINDTLLRNVRKELMENIHFTEKVTDI 70
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -1
Query: 169 CGAILVLLSWKWFSNSS--FITSFLIVLFTLDNKV 71
C A+LV++S W + + F+TSFL+ T+ K+
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKI 468
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.8
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +3
Query: 57 NIDPATLLSNVKSTIKKDVIKELLE-NHFQESKTKIAPHALMLLADVAKCL----VTETC 221
N D L N KS + + LL NHF ++ +K +PH +L V T
Sbjct: 117 NKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTN 176
Query: 222 LRAVKQA---QREGSNKVDVEH 278
+ +VK+ R +D+ H
Sbjct: 177 INSVKRVLLLNRRDDGYIDLRH 198
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +3
Query: 90 KSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETCLRAVKQAQREGSNK 263
K T+ + + ELLE Q +K P + +L D LVT + V A GS+K
Sbjct: 54 KLTVGLNSVNELLERCCQNAKDVTQPAVVFILHDQDSMLVTH-MPQLVANANFYGSSK 110
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 712 QMIRRYRHTAHPMVNGYRRSWTSAMPEAEPSCCLLLST 599
Q RR RH A P+ + + S+ EAE LLLS+
Sbjct: 468 QRRRRRRHEARPLHYQLNQMYNSSASEAESDQELLLSS 505
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 321 FKGSPASAGVNISQYVLHQLC 259
++ SP + +N+SQ LHQ C
Sbjct: 433 YEASPRAKSLNLSQVSLHQAC 453
>SPBC1685.13 |||non classical export pathway protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = -1
Query: 181 NIRACGAILVLLSWKWFSNSSFITSFLIVLFTLDN 77
++R C + L + WF ++ SF++ +F N
Sbjct: 120 SMRRCQELKALCFFLWFMFGLYVASFIVQIFIAKN 154
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 116 KGTIRKPLPRK*NQDCPTC 172
K TI++P+P K N+D +C
Sbjct: 698 KSTIQRPIPIKNNEDSDSC 716
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,504
Number of Sequences: 5004
Number of extensions: 65502
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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