Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV17d19f
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    30   1.6  
02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471...    29   2.9  
05_02_0037 + 5883285-5884292                                           29   5.0  
01_01_0529 + 3874865-3876285,3876352-3876367                           29   5.0  
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115...    28   8.7  
06_03_0845 + 25324209-25324443,25325267-25325313,25325420-253255...    28   8.7  
02_05_0372 + 28370589-28371857                                         28   8.7  

>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 108 DVIKELLENHFQESKTKIAPHALMLLA--DVAKCLVTETCLRAVKQAQR 248
           D I E +E HF + +TK+ P A ML +     + L    C+  +K  +R
Sbjct: 405 DQIMETIEKHFCDEETKVLPQARMLFSPEKQRQLLYKSLCVMPLKLLER 453


>02_01_0628 +
           4717963-4718175,4718719-4718857,4719514-4719740,
           4719825-4719998,4720090-4720176
          Length = 279

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 577 SSNEVCVEYLTVGNSLALLPALLTSMSDG 663
           S NE+C+E   VG+S ++LPA L   ++G
Sbjct: 90  SLNELCLESAAVGDSNSVLPAALKLSAEG 118


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 178 CCWQMWPNVWSPRHAC 225
           CCW   P+VW PR  C
Sbjct: 304 CCWPSPPSVWWPRCGC 319


>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -1

Query: 238 CLTARRHVSVTRHLATSANNIRACGAILVLLSWKWFSNSSF 116
           C  A R+V  T H     N I  CG    +  W W  + ++
Sbjct: 321 CPEASRNVCATHHGIKFVNIINQCGGSFSITLWSWCEDGTW 361


>07_01_0163 +
           1149466-1150593,1150733-1150937,1151453-1151485,
           1152244-1153646
          Length = 922

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 235 LTARRHVSVTRHLATSANNIRAC 167
           L  +RHVS TRH  TS+++  +C
Sbjct: 791 LVVQRHVSATRHKRTSSSSSYSC 813


>06_03_0845 +
           25324209-25324443,25325267-25325313,25325420-25325549,
           25326105-25326205,25326625-25326933
          Length = 273

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 683 PSDGEWLPSLMDVSNAGSRAKLLPTVKYSTQTSFEEGHVIVLGKDWRGAHSKA 525
           P D    PS  ++SN  S +++  ++K    +  +  HV+ L KD   +  KA
Sbjct: 128 PKDARSKPSSGEISNYSSNSRVPSSLKVIFSSFMDTLHVLSLSKDSSSSTMKA 180


>02_05_0372 + 28370589-28371857
          Length = 422

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 108 DVIKELLENHFQESKTKIAPHALMLLADVAK 200
           DVIK LLE    E+ T+++  AL +L DV +
Sbjct: 242 DVIKSLLELLSDEASTRLSSRALDVLLDVVE 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,319,011
Number of Sequences: 37544
Number of extensions: 425232
Number of successful extensions: 1094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)